Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00510 ATGTCTCCACCACTACTTAATGTTGAGGAGGGGGAGGAAAGTCGCAGCAATGTCACTCTGTTGCCTCCCCGAGCTCTATGGAGAGTTCAAAACAATTTGGGATTTGAAGAGCGTAATTACATGGGATTATCTGTTTCTTCTTCAGAGGAAAGCTGTATGACTGCCACAAAGCCTAATGGGAACAAACACTTGCTGAATCTCAAGGCTACGGAATTGAGGCTAGGCATTCCTGGATCTGAATCCCCCGAGAGAGATCCAGATATCAGCTTTCGTAGTTCTTCTCAACTTGATGAAAAAACACTATTTCCTTTGCACCCATCAGGTGATGGTCGCTACTCTTCACCACATAAGGCTGTGGTCTCAGGCAACAAAAGGGGGTTTTCAGATGCTATGAACGAATTCTCAGAGGGAAAATATAACGCTAACATAGGTTTGAAAGCTGGTTCTTTGCTAGAGAACCTTGGAAGTGAAATGGGGAAATTGAAAGAGGCAACTACACAAAAGGCTGTACAAGAGAGGTCTCTAGAAAATAGTGAAATTAGGCCATCTCAAAGCGAGGCTGCAAATAACAACACCAGTGCACCTGTTTCTAAGGCACAGGTTGTCGGTTGGCCGCCCATAAGATCTTTCAGAAAAAACACATTGGCTACAACTTCAAAGAACAATGATGAAGTTGATGGAAAGGCAATACCTGGTGCACTCTTTGTCAAAGTTAGCATGGATGGTGCTCCTTATCTGAGGAAGGTAGATCTGAGGAACTACTCTGCATACCAGAAGCTGTCTTCTGCCCTTGAAAAAATGTTCAGCTGTTTTACTATAGGTCAATATGGAGCTCATGGAGCTCTGGGCATGGAGAAAATGAGTGAGAGCAAGCTGAAAGATCTTCTTCATGGCTCAGAATATGTTCTAACATATGAGGACAAAGATGGTGACTGGATGCTCGTTGGTGATGTCCCCTGGGAGATGTTCATCGACTCTTGTAAGAGGCTGAGGATTATGAAGAGCTCGGATGCAATTGGCCTGGCTCCTAGGGCGGTGGAGAAGTGCCGGAACAGGAACTAG 1062 44.92 MSPPLLNVEEGEESRSNVTLLPPRALWRVQNNLGFEERNYMGLSVSSSEESCMTATKPNGNKHLLNLKATELRLGIPGSESPERDPDISFRSSSQLDEKTLFPLHPSGDGRYSSPHKAVVSGNKRGFSDAMNEFSEGKYNANIGLKAGSLLENLGSEMGKLKEATTQKAVQERSLENSEIRPSQSEAANNNTSAPVSKAQVVGWPPIRSFRKNTLATTSKNNDEVDGKAIPGALFVKVSMDGAPYLRKVDLRNYSAYQKLSSALEKMFSCFTIGQYGAHGALGMEKMSESKLKDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSDAIGLAPRAVEKCRNRN 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2957437 2961928 + Carg08253-RA Car05g00510 148896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00510 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 167 344 IPR003311 GO:0005634|GO:0006355
Car05g00510 353 MobiDBLite consensus disorder prediction 166 198 - -
Car05g00510 353 Pfam AUX/IAA family 70 344 IPR033389 -
Car05g00510 353 Gene3D - 229 347 - -
Car05g00510 353 PANTHER AUXIN-RESPONSIVE PROTEIN 7 139 - -
Car05g00510 353 ProSiteProfiles PB1 domain profile. 233 335 IPR000270 GO:0005515
Car05g00510 353 MobiDBLite consensus disorder prediction 75 118 - -
Car05g00510 353 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 139 IPR003311 GO:0005634|GO:0006355
Car05g00510 353 SUPERFAMILY CAD & PB1 domains 230 334 - -
Car05g00510 353 MobiDBLite consensus disorder prediction 168 198 - -
Car05g00510 353 Coils Coil 161 181 - -
Car05g00510 353 PANTHER AUXIN-RESPONSIVE PROTEIN 167 344 - -
Car05g00510 353 MobiDBLite consensus disorder prediction 78 92 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00510 K14484 IAA; auxin-responsive protein IAA - csv:101221088 602.438
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00510 Car-Chr5:2957437 Car12g00161 Car-Chr12:921650 1.18E-163 dispersed
Car09g00554 Car-Chr9:3132702 Car05g00510 Car-Chr5:2957437 2.61E-29 dispersed
Car14g01655 Car-Chr14:13216158 Car05g00510 Car-Chr5:2957437 1.34E-34 dispersed
Car17g00118 Car-Chr17:742473 Car05g00510 Car-Chr5:2957437 1.79E-19 dispersed
Car12g00160 Car-Chr12:919492 Car05g00510 Car-Chr5:2957437 4.47E-43 wgd
Car05g00510 Car-Chr5:2957437 Car07g00524 Car-Chr7:2645582 1.17E-125 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g561 . . . . . . . . Cmo05g00590 . . . . . . . . Bhi04g00902 Tan02g2510 . . Hepe10g0403 . Lcy13g1453 Cla08g01185 Cam08g1650 Cec08g1226 Cco08g1345 Clacu08g1346 . Cre08g1132 Cone6ag1502 Cone9ag1428 . . . . . Cme03g01778 Blo17g00086 . . Bda13g01347 . . . . . . . . Cma05g00564 Car05g00510 . Cpe11g00495 . . . . . . . . . . . . . . . Lsi08g01048 Csa02g02232 Chy03g01285 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000884 4 6 5 5 3 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 2 2 2 2 2 2 5 7 1 87
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3561 PF02309 AUX_IAA 3.10E-91 CL0072 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00510 Car_Chr05 FPKM 42.31773 44.288349 27.93573 26.162775 35.506886 38.855453 37.16885 29.464245 29.21505 30.128809