Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00514 ATGGGATCGGTATTCCTCACGCTTGGTCTTAGTCTCATGTGGCTCTGTGGACCGGTTTTCGGCCTCTTTGTCCAGTCGCTCGTTGGTCACATGAGCGATCGCTACACCAGCCGATACGGATTCTTTGTGATTGGATTGGATTCTTCGTGGTCACAAAAACTAAAGGTAAGGATTATTGAAGGAATCGGGTGGCAAATGCTTATTTTTCTCTATTTATCGCCACTGGGACAGGTCCTCCTTGGTTTTGGACTTTTAGCACCTCTCTGGCTATATGCGGGTAGTTTTGCTTGTCAGTTCCTTGACAAGGATGGCATGGTTTCCAGTTATAATTATTATCCTTTTAATACTGATTGGATGGGTAGAGAGCTTTATGGTGGCAAGCCAAATGAAGGACAGAGTTATAGTTCTGGAGTCAGAATGGGAGCATTTGAAAGTGGGTGCTGGTTTATATGGAGAATCTCTAATATTTTTATGGCTTTATGTTTTCTTACTATCTTGGTCATTACGTATGAGGCAAACAATATGGGCTACATAGGTCATGATATCCCACCACATAGTATTGTATCAGCTGCATTGATTAACTTTGCTCTTCTTGGTGCCCCTTTGGCAATTAATTACAGTGTTCAATATGCCATGAACTCCTCGCGTGTTGAATCTTTACAACTTGATCAAGGCAGGATTGATGCTGCCTTCTTCAAATGA 702 42.31 MGSVFLTLGLSLMWLCGPVFGLFVQSLVGHMSDRYTSRYGFFVIGLDSSWSQKLKVRIIEGIGWQMLIFLYLSPLGQVLLGFGLLAPLWLYAGSFACQFLDKDGMVSSYNYYPFNTDWMGRELYGGKPNEGQSYSSGVRMGAFESGCWFIWRISNIFMALCFLTILVITYEANNMGYIGHDIPPHSIVSAALINFALLGAPLAINYSVQYAMNSSRVESLQLDQGRIDAAFFK 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2996463 2998237 - Carg08257-RA Car05g00514 148900

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00514 K15378 SLC45A1_2_4; solute carrier family 45, member 1/2/4 - csv:101220384 177.948
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00514 Car12g00209 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00514 Car-Chr5:2996463 Car05g00778 Car-Chr5:6094136 5.32E-12 dispersed
Car05g00514 Car-Chr5:2996463 Car12g00209 Car-Chr12:1317264 2.14E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g575 Blo01g01786 . . . Bpe02g00155 . . Bma01g02572 . Cmo12g00183 . . . Car12g00209 Sed08g1987 . Cpe07g00193 Bhi04g00897 Tan02g2516 Cmetu03g0103 . Hepe10g0399 . Lcy13g1450 Cla08g01190 Cam08g1654 Cec08g1231 Cco08g1350 Clacu08g1351 . Cre08g1137 . . . . . . . Cme03g01774 . . Bda11g00815 . . . . Bma02g00169 . . . Cma12g00228 . Car05g00514 . . . . . . . . . . . . . . . . . Lsi08g01052 Csa02g02236 Chy03g01280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0036778 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00514 Car_Chr05 FPKM 0.0 0.0 0.245412 0.0 5.087679 4.050182 4.486357 0.0 0.0 0.0