Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00517 ATGGCTTTCCACTCAGCCTTCTTTCTTCTTCTGTTCTTCACTTCCGCCATTGCTTCTTCTCAAGCTCTTACTGCCGCCATAGCCAACCAGTCCCAGTTCTTCCTTCTCATGCAAACAACTGCCACCGGTGAGCTCCTCTCTAATTGGGATCTTTCACAAGGAAAATCCTTATGCAACTTCACTGGAATCCGCTGCAATGACGGCGGTCATGTCGTTCGGATCGATATCTCCGGCCACCCTCTCTCCGGTACCTTCCCGGACGATGTATGCTCTTACCTGCCATCACTAAGAGTTCTTCGCCTCGCTGATACCGGATTGTCGGGGCGTTTTCCCTCAGGAATCACCAACTGCTCTCTCATTCAAGAGCTTGACATGAGTTCTCTATATCTCAATGGAACAATCCCGGATTTATCGCAAATGAAACAACTCCGTGTACTCGACCTCTCCTACAATTCGTTCACCGGCGATTTCCCCATGTCGGTTTTCGACCTTGTTAATCTCGAGATACTGAATTTCAACGAGAATTATAATCTCAACTTATGGAAATTACCTGAGAAGATCTCTGGATTGAAGAAGCTGAAATCTATGGTGTTGACAACATGTATGTTGGACGGAGAAATCCCTCGATCGATCGGGAACATGACGTCGCTTATTGATCTCGAACTAAGTGGGAATTTTCTCAAGGGAGAGATTCCAAAAGAAATCTCCTTGCTCAAGAACCTGCAACAACTTGAACTCTATTACAATCAACTCACAGGAAACATACTGGAAGAGCTCGGAAATCTAACCGAGCTCGTCGACGTCGACATGTCGGTGAACCTTTTGACCGGGGAGATTCCGGAATCTATATGCAAACTCCCTAAGCTTAAAGTTCTACAGATTTACAACAATAGCCTAACAGGAGAGATTCCAAGTGTATTAGCTAACTCAACAACACTAACTATGCTATCACTTTATGACAATTTTCTTACAGGACAGATTCCACAAAAGTTGGGGAAGTTCTCACCTATGGTCGTCGTCGACTTGTCGGAGAATCGCCTGTCGGGATCATTGCCATTGGATATATGCAGAGGAGGGGAATTGCTCTACTTTCTTGTTCTTCAAAACAGCCTTTCCGGAGAAATTCCGGCGAGTTTTGCTGAATGCCGGTCACTTTTAAGGTTTAGAATTAGTTTCAATCAGCTGGTCGGAGCAATTCCTGAAGGTGTTTTTGGTCTCCCACATGTTTCAATCATTGATGTTGCTCATAATAACCTCACTGGTTCCATTTCAAATTCAATCTCACAGGGTAGAAACTTGTCGGAATTGTTCTTACAAAAAAACAGGATTTCTGGAGTTATCCCGCCGGAGATTTCAGCAGCCACCAATCTGGTGAAGCTAGATCTCAGTAACAATCTCCTCTCCGGCGCAGTGCCGCCGCAGATTGGTAGCCTGAAGAAGCTAAATCTGGTGATGTTACAAGGAAACCAATTGAATTCTTCAATCCCTAGTTCATTGACATCGTTAAAATCCCTCAATGTTCTTGATCTCTCAAACAATCGTTTATCCGGGAAAATCCCAGAAAGTTTGGGTAAATTGTTCCCAAGTTCCTTGAATTTCTCGAACAATCAACTTTCCGGTCCGATTCCGATGTCTTTGATCAAACAAGGGTTAGCCGATAGCTTCTCCGGCAACCCAAATCTCTGTCTTCCACCGGCGTATTTCATTTCATCGGATCAGAAATTCCCCATTTGTTCACAAATTTCCTTAAAAAAACGTCTAGATTTCATCTGGGTAATCGTAATTCCGTTGCTTATTTTCTTCACCGGCGCCGTTCTGTTTCTAAAACGAAAAAAATCACCAGAGATCGAAAGCAAGGAAACCCTCTGTTCGTCGTTCTTCCATAAACAGAGCTTCGACCAAAACAGGATTCTCGAATCCATAGCGGAAAAGAACATCGTCGGCCATGGCGGATCGGGAACGGTTTACAAAATCGAGCTCGGAAACGGAGAAATCGTCGCCGTGAAAAGGCTATGGAATCGAAGAACGAAACATTTCTTCGACAAGGAATTGAAAACAGAGGTCGAAACCCTAGAAACTATCAGACATAAGAACATCGTGAAACTCCACAGCTACTTCTCCGGTCGAAATTGCAGCCTTCTGGTTTACGAATACATCCCAAACGGAAACCTATGGGACGCCCTTCATAAAGGGTGGGTTTATCTCGATTGGCCGACGCGCCGCCGCATCGCGGTGGGGATCGCGCAAGCCCTCGCCTATCTCCACCACGATCTCTCGCCGCCCGTAATACACAGAGACATCAAAACCACAAACATTCTATTAGACGAAAATTACGAACCCAAAGTGGCAGATTTCGGCATAGCCAAAGTTCTTCAAGGAACCAAAGATTCAACGAACTCTGTAATCGCCGGCACATACGGCTACTTAGCTCCCGAATATGCATATTCATCGAAGGAGACAACGAAGAGCGACGTGTATAGCTTCGGGGTGGTGTTAATGGAGCTGATCACCGGGAAGACGCCGATTGCGGCGGAGTACGGCGAGAACAAGAACATTGTGTTCTGGGTTTCTAATAAAATGGACACAAAAGAAGGGGTTCTTGAGATTCTTGATGAGAGATTAAAAGGGTTGTTCATGGATGAGATGGTTAAGGCCTTGAGGATCGCCATTCGCTGCACTTACAAGAATCCAGCGCTCCGACCCGCCATGGGAGAGGTGGTTCAGCTTCTCCAAGAGGTCAAAAAGGGCGAAGATACGTATGATGCCACTCGAATAAATGCTCATGTTAAAACTTCGAAGCTTTTCGTATAA 2811 45.29 MAFHSAFFLLLFFTSAIASSQALTAAIANQSQFFLLMQTTATGELLSNWDLSQGKSLCNFTGIRCNDGGHVVRIDISGHPLSGTFPDDVCSYLPSLRVLRLADTGLSGRFPSGITNCSLIQELDMSSLYLNGTIPDLSQMKQLRVLDLSYNSFTGDFPMSVFDLVNLEILNFNENYNLNLWKLPEKISGLKKLKSMVLTTCMLDGEIPRSIGNMTSLIDLELSGNFLKGEIPKEISLLKNLQQLELYYNQLTGNILEELGNLTELVDVDMSVNLLTGEIPESICKLPKLKVLQIYNNSLTGEIPSVLANSTTLTMLSLYDNFLTGQIPQKLGKFSPMVVVDLSENRLSGSLPLDICRGGELLYFLVLQNSLSGEIPASFAECRSLLRFRISFNQLVGAIPEGVFGLPHVSIIDVAHNNLTGSISNSISQGRNLSELFLQKNRISGVIPPEISAATNLVKLDLSNNLLSGAVPPQIGSLKKLNLVMLQGNQLNSSIPSSLTSLKSLNVLDLSNNRLSGKIPESLGKLFPSSLNFSNNQLSGPIPMSLIKQGLADSFSGNPNLCLPPAYFISSDQKFPICSQISLKKRLDFIWVIVIPLLIFFTGAVLFLKRKKSPEIESKETLCSSFFHKQSFDQNRILESIAEKNIVGHGGSGTVYKIELGNGEIVAVKRLWNRRTKHFFDKELKTEVETLETIRHKNIVKLHSYFSGRNCSLLVYEYIPNGNLWDALHKGWVYLDWPTRRRIAVGIAQALAYLHHDLSPPVIHRDIKTTNILLDENYEPKVADFGIAKVLQGTKDSTNSVIAGTYGYLAPEYAYSSKETTKSDVYSFGVVLMELITGKTPIAAEYGENKNIVFWVSNKMDTKEGVLEILDERLKGLFMDEMVKALRIAIRCTYKNPALRPAMGEVVQLLQEVKKGEDTYDATRINAHVKTSKLFV 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3004746 3007872 + Carg08260-RA Car05g00517 148903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00517 936 ProSitePatterns Protein kinases ATP-binding region signature. 647 669 IPR017441 GO:0005524
Car05g00517 936 Pfam Leucine Rich Repeat 505 526 IPR001611 GO:0005515
Car05g00517 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 762 774 IPR008271 GO:0004672|GO:0006468
Car05g00517 936 ProSiteProfiles Leucine-rich repeat profile. 504 526 IPR001611 GO:0005515
Car05g00517 936 Pfam Protein kinase domain 643 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00517 936 ProSiteProfiles Protein kinase domain profile. 641 913 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00517 Car12g00210 CCT
Car05g00517 Car09g00542 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00517 Car-Chr5:3004746 Car09g00543 Car-Chr9:3084391 0 dispersed
Car12g00210 Car-Chr12:1325059 Car05g00517 Car-Chr5:3004746 0 wgd
Car19g00389 Car-Chr19:5706454 Car05g00517 Car-Chr5:3004746 0 wgd
Car05g00517 Car-Chr5:3004746 Car09g00542 Car-Chr9:3080351 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88877 PF00069 Pkinase 9.70E-49 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00517 - - csv:101220145 1525.76