Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00538 ATGAGCAGAAACGAAAACGGCACAACAACGTGTTCGTCTCCGGAGCCGAACAAGAAGCCGAAACGCATCAGAGACACAGAGGACTCGAAGCACCCGCTTTACAGAGGCGTCCGAATGAGAAATTGGGGGAAATGGGTGTCCGAAATTCGTGAGCCAAGAAAGAAATCCCGCATTTGGTTAGGCACTTTCCCCAGCCCTGAAATGGCTGCACGAGCCCACGATGTAGCCGCCTTAAGCATCAAAGGAAAAGCCGCAATCCTTAATTTCCCCGACCTGGTACACCTCCTACCTCGCCCTGTTTCACTCGCCCCTCGCGACGTTCAGGCCGCCGCCGCTAAAGCCGCTCATATGCAACATTTCTCCTCTACTCATACTAATAATAACAATTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGATGCCACCGATGAGCTCACGGAAATCGTCCAGCTACCGAGTCTCGGAACGAGTTACGACGGCGGCGACGGCGGATTCGGTGGTGAGTTTGTGTTTTTTGACTCGGGGCAGGAATTGGAATCTGGGTGTTGGATGTACACGCCGCCATGGGTGCAGAGCTTGGAGGATTGTGACAATGATGATTATGGTAAGTTCGAAGGATTGCTGTGGGATTATTGA 642 52.96 MSRNENGTTTCSSPEPNKKPKRIRDTEDSKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGKAAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAHMQHFSSTHTNNNNSSSSSSSSSSSSDATDELTEIVQLPSLGTSYDGGDGGFGGEFVFFDSGQELESGCWMYTPPWVQSLEDCDNDDYGKFEGLLWDY 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3137565 3138206 - Carg08281-RA Car05g00538 148924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00538 213 MobiDBLite consensus disorder prediction 1 16 - -
Car05g00538 213 MobiDBLite consensus disorder prediction 114 144 - -
Car05g00538 213 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Car05g00538 213 MobiDBLite consensus disorder prediction 1 30 - -
Car05g00538 213 MobiDBLite consensus disorder prediction 118 144 - -
Car05g00538 213 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00538 Car-Chr5:3137565 Car10g00596 Car-Chr10:3011050 2.06E-60 dispersed
Car12g00237 Car-Chr12:1595860 Car05g00538 Car-Chr5:3137565 1.08E-72 wgd
Car05g00538 Car-Chr5:3137565 Car09g00561 Car-Chr9:3186595 3.72E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3562 PF00847 AP2 1.70E-13 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00538 K09286 - csv:101206242 245.743