Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00540 ATGGAAGGTCCATTGGCTGCCGATGAAGATAGAGACATGGAAGAGCCATTGTTGAGCAACTCTGATCGCAAAGGAGGCTTGAGAGCTTTGCCTTTCATTATCGCTAATGGAGCACTTGAGAGGCTCGCGAGTCAGGGTTTATCGCCGAGTATGATACTCTATTTGACTAGGGTTTATGGAATGAACTCCGCCAATGCTTCCAATGTCATCTTCCTCTGGTCTGCCGCCTCAAATTTTACTCCGATCATTTGTGCTTTTCTCGCTGATTCCTATTTTGGTCGGTTTCGGATGATCGCGGCTGGCTGTATCATCAGCTGTTTGGGGATGTTTGTTTTATGGCTAACTGCAATGATTCCGCAAGCAAGGCCTTTCTGTGATGGTGCCATTTGTGATACCCCATCGATAGCTCAACTATTGTTTCTATATTCGTCTTATGCACTAATGTCGATGGGATCTGGCTGCCTTCAATCATCCAACCTCGCCTTTGGCGCAAATCAATTGCACAGGAAAAACAAATCCAATTCAGGCATTTTGGATCGTTATTTCGACTTATATTATGTTTCATCTGCTAGTGGATCACTTATAGGAGTGTCATGTATTGTGTATATTCAAGATCGTATGGGATGGAGGGTGGGCTTTGGAGTTCCTGTTGCACTCATGTTATTATCTACGGTGATTTTTCTCTTGGCCTCTCCCTTATATTTGAAGCCGATGCCTAGCAGTAGTTGGTGTGCTGGGCTTGTGCAAGTTTTCGTTGCTGCTTATAAGAAGAGGCATTTGCAAGTATCATCTACTGGCACATCTGAAATGTACCACCACAAAAGTGGATCACCGCTTGCCATGCCAAGTGACAAGTTAAGGGGTAGCCTTGGACTGTTACAAATGGTATCAGAACCAAACACAGGCAATGTGCCCAGCGTCAGGGGGTGGATTACGCGTTTTAAAATCGTGAGGTTGACGGTGATACTTAACGGGCCAAAGCGGACAATATCTGCTAGCGGCGGTTACAAATGGTATCAGAGCCAAACACCGGGCGATGTGCCAGCGAGGACGTTGGCCCCCAAGGGAGGTGGATTGTTTCTGAACAAAGCGTGCATCATTAGAAATTCCGAGGACGAGCTAGCTTCAGATGGGAGGGCTTCAAATCCTTGGATCCTATGCACTGTGGAACAAGTTGAAGACCTGAAAACACTCATCCGGATAATGGCATTGTGGTCTACTGGGATCCTTGTTTGTGCAGCTTTGAGTCAACCATTTTATGTTCTCCAGGTTGCATCTATGGATCGACACCTTACCCCGACTTTCGAAGTTCCTGCAGGCTCGTTTGGTGCAGTGTTTGTTGTTTCTCTAATATTATGGATTATGTTATATGATCGCTTGATCCTCCCTCTGGTATCCAGTTGCAGGGGAAAACCAACTCGTCTCAGTGGGAAAACCAGAATGGGAATTGGGATTCTTTTGTGCACCTTCAGTTTGGCAGTAACGGCAGTCGTCGAGAGTAATCGACGTGCTTTAGCCATAAAGGAAGGCTTCTCCGACGACCCAGATGCTGTGGTAAACATGTCTGCATTTTGGACCCTACCACGCTACATCTTATTAGGTATGGCCGAGGCTTTTAACGTGATCGGGCAAATCGAATTCTTCTACTATGAGCTTCCAAAAGCCATGTCCAGTGTAGCAACCTCTCTTTTTGGGCTGAGCATGTCTGTAGGCAACTTGGCTGCTAGTTTTATAGTGACTATCGTTGATAATTTCACTAAAGCAGCAGGCGTAAAGAGTTGGGTTTCCAGCAACATCAACCAGGGCCACAGTGACTATTATTATTGGCTGCTTTTTGGTTTGCTGTTCGCTAATTTTTTGTATTTTCTTGCCTGTAGCAAGTCTTATGGTCCTTCCAAGGAAGAAGCAAGAGGTGGATCTAATGCTGAAGATGATCTCAATAATACCAACAAAATCCGGGGTTCCATCGAGTTTAATCCGACTGGTTTGCTTCCCAATCGTCGGTACGTAACTGTGGAAATTCCGGCGAGGAATCAAAGAAGGTCGTCGAGATTGTTCGAATTAATGGAGGTTCTAGAAGACGGGGAGAAGACCGGAATCGCCGCAAGCGGCAGCGAGGGAGCCGAGCAAGCTTCAAATTACACAAATGGTGGTTTGAAAACCATGCCCTTCATAATCGTTAATGAGACATTTGAGAGGGTTGCAAGTTTGGGGCTAACTCCTAACATGGTGTTCTACTTAAGGGACGTTTTCGGATTCGAAATCGCCGCTGCTTCTATCATTCTGTCTCTGTGGTCTGCTGCTTCCAATGCTTTAGCCATTGTTGGCGCTGTTCTTGCTGATTCTTACTTGGGGCGTTTCTGTGTTATAATTCTCGGATCCTGCAGTAGCCTTCTTGTAAGACTCGTTGATTATCGAAAATTAACTGTTTCCAATTCCATTGATGTTGTAGTCTGTCGTGTGGGGATGATTCTTTTGTGGTTAACAGCAATAATCCCACAACTGAGACCTGAATCTTGTAGCCCCTCTGGAATATTATGCGACTCTGCTAATCCTTACCAGCTCGCTGTACTGTTCTCTTCGTTGGTGTTCATATCCATTGGAGCTGGTTGCATTAGGCCATGTTCTGTAGCCTTTGGTGCAGACCAACTCACCAAGGAGGAAAAGCCCAACAACGAAAGTGTCTTGGATTCCTACTTCAATTGGTATTATGCATCGATTGGAATAGCTACGATTGTTGCATTATCTCTAATTGTGTTCATTCAAGATAAATTTGGATGGGGAATTGGATTTGCTGTTCCTGCAGTTCTCATGCTTTTTTCTGTGCTAATATTCCTAGTGGGTTCTTCTCTGTACGTGAAAGTGAAGCCAACACAGAGTTTGTTGACCGGGTTTTTACGAGTAATTGTGGTGGCATTTAAGAACCGAAAATTGTCGCTTCCTTTTAGTAACTTTGATCAGTATTACCTTGGTCGTGATCCGAAGTGTCGCATTCCGACCAATTCTATGAGGCTGTTACAAATGGTATCAGAGCCAGACACCGGTCGTTGTGCTAGCGAGGACGCTGGGCTCTCAAGAGGGTGGATTGCTGTTACAAATGGTATCAGAGCCAGACACTGGGCTCTCAAGAGGGCGGATTGTGGGATCCCACGTCGGTATCTGAATAAGGCCTGTCTTATAAAAGACGCTAAGAACAATTTAAACCCAGATGGTTCAGTGTCCAATCCATGGAACCTATGTTCTGTGGATCAAGTTGAGTCGCTCAAAGCTTTTCTGCGAATCATCCCAATGTGGTCAACAGGCATTCTCATGCTTGTCTGCTTAAACCAAAATTCATTCGGAACGATCCAAGCCAAGACGATGAACAGACACATAACCCGTAGTTTCGAAATCCCTGCAGGATCCATCACCATTTTCATGGTCCTTTCTTTATTTTCATGGATCATGTTCTATGACAGAATACTTGTGCCTTTACTAGCAAGACATGGCCATGCTGGTGGACTCAGTCCCAAATTAAGAATTGGAATCGGTCTTCTTCTCTCGTGCTTCGCAATGGCGATTTCAGCAGGCGTTGCATGTATAAGGCGTCGAGTTGCCATAGAACAAGGCTTTGAAGACCAACCCAATGCTGTCATCAACATGTCAGCTCTATGGATGGTGCCTCAATGTGTAGTCCTGGGAGTTGCTGAAGCTTTGAACTCAGTCGGACAGGTCGAGTATTTCTACTCGCAGATGCCGAAGACGTTGTCGAGTGTCGCGGTTGCTCTATACTCTTTTGAGATGGCTGTAGCTAACTTGGTGGGAAGCATCATTGTGCAGATGGTAAATAGCATAACAGGAGAAGGAAATAAGACAAGCTGGTTGGATAACAATGTCAACAAGGGTCACTTGGACTACTTTTACTGGTTATGTGCTGCATTGGCTTTGATCAACTTTTTTGGATATCTTGTTTGTTGTTGGGCTCTTGGGAGACAAGACAAGGAACCAAATGAGATGGAAGACTTTGAATATAGGAACTTACCTTCATCATAA 4032 45.04 MEGPLAADEDRDMEEPLLSNSDRKGGLRALPFIIANGALERLASQGLSPSMILYLTRVYGMNSANASNVIFLWSAASNFTPIICAFLADSYFGRFRMIAAGCIISCLGMFVLWLTAMIPQARPFCDGAICDTPSIAQLLFLYSSYALMSMGSGCLQSSNLAFGANQLHRKNKSNSGILDRYFDLYYVSSASGSLIGVSCIVYIQDRMGWRVGFGVPVALMLLSTVIFLLASPLYLKPMPSSSWCAGLVQVFVAAYKKRHLQVSSTGTSEMYHHKSGSPLAMPSDKLRGSLGLLQMVSEPNTGNVPSVRGWITRFKIVRLTVILNGPKRTISASGGYKWYQSQTPGDVPARTLAPKGGGLFLNKACIIRNSEDELASDGRASNPWILCTVEQVEDLKTLIRIMALWSTGILVCAALSQPFYVLQVASMDRHLTPTFEVPAGSFGAVFVVSLILWIMLYDRLILPLVSSCRGKPTRLSGKTRMGIGILLCTFSLAVTAVVESNRRALAIKEGFSDDPDAVVNMSAFWTLPRYILLGMAEAFNVIGQIEFFYYELPKAMSSVATSLFGLSMSVGNLAASFIVTIVDNFTKAAGVKSWVSSNINQGHSDYYYWLLFGLLFANFLYFLACSKSYGPSKEEARGGSNAEDDLNNTNKIRGSIEFNPTGLLPNRRYVTVEIPARNQRRSSRLFELMEVLEDGEKTGIAASGSEGAEQASNYTNGGLKTMPFIIVNETFERVASLGLTPNMVFYLRDVFGFEIAAASIILSLWSAASNALAIVGAVLADSYLGRFCVIILGSCSSLLVRLVDYRKLTVSNSIDVVVCRVGMILLWLTAIIPQLRPESCSPSGILCDSANPYQLAVLFSSLVFISIGAGCIRPCSVAFGADQLTKEEKPNNESVLDSYFNWYYASIGIATIVALSLIVFIQDKFGWGIGFAVPAVLMLFSVLIFLVGSSLYVKVKPTQSLLTGFLRVIVVAFKNRKLSLPFSNFDQYYLGRDPKCRIPTNSMRLLQMVSEPDTGRCASEDAGLSRGWIAVTNGIRARHWALKRADCGIPRRYLNKACLIKDAKNNLNPDGSVSNPWNLCSVDQVESLKAFLRIIPMWSTGILMLVCLNQNSFGTIQAKTMNRHITRSFEIPAGSITIFMVLSLFSWIMFYDRILVPLLARHGHAGGLSPKLRIGIGLLLSCFAMAISAGVACIRRRVAIEQGFEDQPNAVINMSALWMVPQCVVLGVAEALNSVGQVEYFYSQMPKTLSSVAVALYSFEMAVANLVGSIIVQMVNSITGEGNKTSWLDNNVNKGHLDYFYWLCAALALINFFGYLVCCWALGRQDKEPNEMEDFEYRNLPSS 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3153472 3162062 + Carg08283-RA Car05g00540 148926

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00540 1343 MobiDBLite consensus disorder prediction 1 22 - -
Car05g00540 1343 MobiDBLite consensus disorder prediction 1 21 - -
Car05g00540 1343 Pfam POT family 818 1288 IPR000109 GO:0016020|GO:0022857|GO:0055085
Car05g00540 1343 Pfam POT family 376 595 IPR000109 GO:0016020|GO:0022857|GO:0055085
Car05g00540 1343 Pfam POT family 95 274 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00540 K14638 SLC15A3_4, PHT; solute carrier family 15 (peptide/histidine transporter), member 3/4 - pop:7495701 620.157
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00540 Car-Chr5:3153472 Car10g00578 Car-Chr10:2915086 3.95E-70 dispersed
Car05g00540 Car-Chr5:3153472 Car08g00601 Car-Chr8:3900140 8.51E-73 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g306 Blo01g01773 . . . Bpe02g01179 Bpe02g00171 . Bma01g02554 Cmo05g00622 . . Cma05g00596 . . . . . Bhi04g00838 . . . Hepe10g0353 . Lcy13g1408 . . . . . . . . . . Cone20ag0602 . . . Cme03g01737 . . . . . . . . . . . . . . Car05g00540 Cpe11g00522 . . . . . . . . Cla08g01227 Cam08g1686 Cec08g1265 Cco08g1385 Clacu08g1384 . Cre08g1169 Lsi08g01090 . Chy03g01243 .
Vvi11g311 . . . . Bpe01g00541 . . . . . Cma05g00596 . Car05g00540 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo05g00622 . . . . . . . . . . . . . . . . . . . . . . Csa01g01742 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003157 1 4 1 2 1 1 1 1 1 3 1 1 1 2 1 1 1 0 1 1 2 4 1 2 3 1 3 2 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00540 Car_Chr05 FPKM 4.323454 4.003042 4.430706 4.268737 5.928188 6.351676 6.239785 5.202172 5.558277 5.940208