Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00546 ATGGAGAATTCTTCTCTCGATCAAGAGACCGCGAAGAAAGTTCTTCGTCAGGTCGAGTTCTATTTCAGTGACAGTAATCTTCCTAGAGATGGTTTTCTTAAGAAAACTATTAGCGGAATCGCCGATGGAATGGTCGATTTGTCTTTGATTTGTACGTTTTCTCGGATGAAAGGACATCTTAAATTGAAGCAGGACGTGAAACCAGAGGAGATTCCAGAAGATACTCTGAAGGCCGTCGCTGAAACTCTAAGAAGCTCCTCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAACTACTGAACTCCCAAAGCCCGAAGAGTTAATAGAACAATTGGATGATAAAACCATAGCTGCATCACCGTTTGAATATGATATCAAGCTTGAAGATGTAGAAGCTTTCTTTAATGAAATTGCAAAGGTCAACAGTGTGAGGCTGCCGCGCCACGTTGCAGATAAACGGGTTTTCTGTGGAACTGCCTTGGTAGAATTTTCTACCGAGGAAGATGCAGAAAAAGTTTTGAAGGAGAGCTTGCTATATGCTGGTGCCAAGTTAGAATTGAAACCAAAGAGGGATTTTGATGCGGAGAGAGCAAAAGAGACAGAGGAGTTCGAAAGTTCACGCGCAAACTCAAGTGCAAACCGCAAGAATAATAATCCCCCCGAATCAAACTACCCTAAAGGCTTAATTGTCGCCTTTACATTGAAAAGTGTGTCATCTGGAAGTTCTGCTGAGGAAAATGGATCTCATGGTGTAGCCGCTGATAAGACCGAATGCAAACCAGACGAAAGATTAGATTCCTCAAAGAACGACTCTGAGAAAACGGAGCAAATAGGGGAAGAAGCAAATATGAGTAAAGATGAAGAGATTAACAGTGCTGATGATAACAATGGAGAGGCTGATAAGAAAAATGACTTAGGCAACGAAGAAAGACCCGAAGTGGAAGAGCGGACTACGAATGATACCGTCGATGAACATGAAGAGGATGAAGAAAAACCCACAGCTGCTAAATCCAAAAACAACATGAATGTGGTTTCGCGCGAGGATTTGAAGGTTATTTTTCAGAAGTACGGAAGCGTCAAGTTCATCGATTTTAAGATTGGAGACGAGTCGGGCTATATCAGATTTGAAGAGCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCAGTACTTGCCGAACAGGGGGGGCTGGTTGTGAAGAGTTTTATAGCCACTTTAGAGCCAGTATCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAATCAAGAAAAGCATCATCGCGACTTTAAGAGCAACCGTGGAAGGGGTGGTAAATTCAATAGAGGAGGTGGCAAGCATGCTCGGTCGAGAGGGCACGGCAACGGCAACGACCGAGGTCGCCCGAATAAAGCACAGAAGGTGTGA 1419 44.33 MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTISGIADGMVDLSLICTFSRMKGHLKLKQDVKPEEIPEDTLKAVAETLRSSSTIKVSEDGKKIGRTTELPKPEELIEQLDDKTIAASPFEYDIKLEDVEAFFNEIAKVNSVRLPRHVADKRVFCGTALVEFSTEEDAEKVLKESLLYAGAKLELKPKRDFDAERAKETEEFESSRANSSANRKNNNPPESNYPKGLIVAFTLKSVSSGSSAEENGSHGVAADKTECKPDERLDSSKNDSEKTEQIGEEANMSKDEEINSADDNNGEADKKNDLGNEERPEVEERTTNDTVDEHEEDEEKPTAAKSKNNMNVVSREDLKVIFQKYGSVKFIDFKIGDESGYIRFEEPEAAQKARAAAVLAEQGGLVVKSFIATLEPVSGEAEKEYWRLLRSNQEKHHRDFKSNRGRGGKFNRGGGKHARSRGHGNGNDRGRPNKAQKV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3198358 3203055 - Carg08289-RA Car05g00546 148932

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00546 472 MobiDBLite consensus disorder prediction 427 472 - -
Car05g00546 472 Pfam RNA binding motif 347 438 IPR014886 GO:0003723
Car05g00546 472 MobiDBLite consensus disorder prediction 198 345 - -
Car05g00546 472 MobiDBLite consensus disorder prediction 253 323 - -
Car05g00546 472 MobiDBLite consensus disorder prediction 209 226 - -
Car05g00546 472 ProSiteProfiles xRRM domain profile. 331 457 IPR014886 GO:0003723
Car05g00546 472 Pfam La domain 14 84 IPR006630 -
Car05g00546 472 MobiDBLite consensus disorder prediction 455 472 - -
Car05g00546 472 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 177 IPR000504 GO:0003723
Car05g00546 472 ProSiteProfiles La-type HTH domain profile. 4 108 IPR006630 -
Car05g00546 472 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 202 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00546 K11090 LA, SSB; lupus La protein - csv:101204162 722.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00546 Car12g00248 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00546 Car-Chr5:3198358 Car07g00100 Car-Chr7:619949 6.37E-15 dispersed
Car12g00248 Car-Chr12:1662674 Car05g00546 Car-Chr5:3198358 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g328 . . . . . . . . Cmo05g00630 Cmo12g00218 . Cma05g00604 . Car12g00248 Sed01g1286 Cpe07g00227 . Bhi04g00824 Tan02g2579 Cmetu03g0669 . Hepe10g0345 . Lcy13g1390 . . . . . . . . . . . . . . Cme03g01728 . . . Bda13g01316 Bpe14g00532 . . Bma02g00072 . . . . Cma12g00264 . Car05g00546 Cpe11g00527 . . . . . . . . Cla08g01236 Cam08g1693 Cec08g1272 Cco08g1393 Clacu08g1390 . Cre08g1175 Lsi08g01099 . Chy03g01232 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009894 1 1 0 1 1 1 2 1 0 1 1 0 2 1 1 2 1 3 2 0 1 1 1 0 1 1 1 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00546 Car_Chr05 FPKM 1.712904 1.649771 5.213088 4.909978 4.414677 3.890318 4.246291 3.960024 3.13382 4.260086