Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00549 ATGGCGTCCGGCTCTCCTCCTTCGCGCATCGACCAGTTTTATGCTTCAAAGAAAAGGAAACCTCTTACTCCCAGTCTGAAGTCAGGGAGTTACGACAAGGATGGAAAAAGGTCACTTGAAGGGTCGCCTGGTACCAAAGGTACGTTGGACAATTACCTGGTGACCTCACAGGACCTTGGCAACGATAACCCATCACATTCAGTTCGGGAAAACTTGTCTGGGCAAGAGCTAGTAAAGCGAAACCTATTGTTGAAAATTAATAGCTCCTCTAGAAATGAACATGAGGAACCCACTTTGTCTAAAGGGTTTCACACTTCTGAAGCAACTGAAGGAATCAAGAAAAGAACTCTGGAAGATTCATACGAGACCAGAAGTTCAGCAGTCAAATCTATGGCAAGTGACTGGGGTGTCACACCGTGCATGGAGAAACCAGAGCTTAAACAGTTTGCAGCTGACTTCTTGTCTCTGTACTGCAGCAGTGAACTACAGACGACTGTTAGTTCGCCAGTAGAGCAAAAAGTAACTTTTAAGAGGCACTCCAGTCCATCTCTACTAGATGGGGAGGCTAAATTACCGAAGAAGTTGCATACGATGGTGGGTCCATCAAATGCCAAAGGTGAAACCGATTCCTTAAGTGCATTGAGTGATGGAAACAAGCAGTCCAAATTTTTTGTAGAAACCGGGGATACTGACAATCACCATCCTGTTGCGCTTAAGGCATGCCTGCAGAAATGCAATAAAGCACCTATATCACCTTATTGTTTGACTGAATGCAGAACACCAGGCTTGTCGACTGCCAATGCATGTTTTCGTGAGACGCCCAAGTCGGGAAGCTCGTCATTTTCTCCTGGAGAAGCTTTTTGGAAAGAAGCAATTGTGTTTGCAGATGGTTTATGTGCTCCTAGCATTGACCTTACCAGTTACGATGCTGAAGGATCTAATCCTGCAGAGGGCCAGAGTAATACGAAGAAACTCCTAATACCAGGGGAACCCACTCAGAAAAGGTTAAAAGGACAGTTTGGTGGAGGTAGTGGTGGAGTCCGGCTTGGGGAACCTGGTGCTTCCATAGTTTCACTGAGGAGTGATTTGAAAGAGTTAAATAGAGAAGTGTCTTCACTTCCTGTTAAGCATTTTGACTTCTCGGCTGATGATAAAAACTTGGTTGAAAGTACATCCCCTTCTTGTGCTTCAAATGAATCTAAAGTTCATGCATATGAACTTAATGAGCAGTCTGATTGTCGTTATACAACTCATGACAGTCCACCAAAGCATAATGAAAAGATCTGTGACAGAGATTCTCTTACAAAAGAGAAGATACATGAAACGAAAGTAACTTCGTCTGTTCCAATAGTGACTGAAGCGAAATTAAATATATTTAGTCCTTCTGATAGTATCACATCAGACACATTGGTTCATGAACTTAGGGCTTCTACTGTTCAGGATTCTAAAGAGGGAATGACACCTTCAAGTTCAATAAGACATAAAGATTGGCTGGATCTAAGTTACTGGCTGCCTCGTGAAATTTGCAGCATTTATAAAGAGAAAGGAATCACAAAACTGCATCCTTGGCAGGTTGAATGTCTTAATGTAGATGGTGTCTTGCAGAGAAGAAATCTTGTTTATTGTGCATCCACCAGTGCTGGAAAAAGTTTTGTTGCTGAGATTTTAATGTTAAGGCGGGTAATTTCAACTGGAAAGATGGCACTTCTTGTCCTTCCATATGTATCAATTTGTGTAGAAAAGGCCGCGCATCTTGATGTTCTTCTTGAACCTCTGGATAAGCATGTGCGTAGTTATTATGGAAATCAAGGTGGTGGAACGCTTCCCAAGGATACTTCTGTGGCTGTTTGCACAATTGAGAAGGCAAACTCTTTGATAAACAGATTGTTGGAAGAGGGCCGTTTGTCAGAAATTGGAATTATTGTGATAGATGAATTGCACATGGTTGGGGATCAGACGAGGGGTTATCTTTTGGAACTATTGTTGACAAAACTTCGTTATGCTGGTGGTGAAGGTAATTCAGATTCTAGCAGTGGTGATAGTTCTGGGACAAGCAGTGGTAAGTCAGACCCTGCTCATGGTATTCAAATAGTTGGCATGAGTGCAACCATGCCAAACGTGGCAGCTGTTGCAGATTGGCTTCAGGCAGCCTTGTACCATACTGATTTTCGACCTGTTCCTCTAGAGGAGTACATTAAAGTTGGGAATACCATTTATAATAAAAGTTTGGACATTGTTAGAACAATCTCAAAAACAGCTAATCTTGGCGGTAAGGATCCAGATCACATTGTAGAATTATGTAATGAGGTAGTTGACGAGGGTCACTCAGTATTGATCTTTTGCTGTAGTCGGAAAGGATGTGAATCAACAGCAAAACATGTGTCAAAATTTCTTAAGAAGTTTTCTGTCAAACTTCATAATGAGAACAGTGAGTTTGCAGACATTTCTTCGGCAATTGATGCGCTGCGAAGATGTCCTGCTGGGCTGGATCCTATATTAGAGGAAACCTTTCCATCTGGCGTTGCCTACCACCATGCTGGCCTTACTGTTGAGGAAAGGGAGATTGTTGAAACGTGCTACCGCAAGGGTCTTTTGCGTGTTTTAACTGCTACATCTACCTTAGCTGCTGGAGTTAACCTGCCAGCTCGAAGGGTCATTTTCCGACAACCCAGGATTGGACGAGACTTTATTGATGGTACAAGGTATAAGCAGATGGCTGGTCGGGCTGGCCGGACTGGTATTGATACCAAGGGGGAAAGTGTACTCATCTGCAGACCAGAAGAGATTAAGAGAATTAATGAACTTCTTAATGAGAGCTGTCCACCACTGCAATCATGTTTGTCTGAAGATAAGAATGGAATGACTCATGCAATTTTAGAAGTTGTGGCTGGTGGGATTGTTCAAACTGCTACTGATATTCACCGATATGTAAGGTGTACTCTTCTGAATTCTACAAAACCATTTCAAGACGTGGTTAAATCAGCACAGGAATCTCTTCGGTGGTTATGCCATGGAAAATTTCTTGAATGGAACGGAGATACCAAGTTGTATAGTACCACGCCTCTTGGACGTGCATCATTTGGAAGCTCTCTTAGTCCAGAAGAATCACTAATTGTGTTGGATGATCTTTCAAGGGCCAGAGAAGGATTTGTGCTTGCATCTGATCTGCATTTGGTGTACCTAGTCACGCCGATCAATGTTGATGTTGAGCCAGATTGGGAGTTATATTATGAACGGTTTATGGGCCTGTCTTCTCTTGACCAGTCTGTTGGGAATCGAGTTGGAGTTACAGAACCATTTTTGATGCATATGGCACATGGTGCACCAGTTCGACGTGCAAACTTATCACGAAATGGTGTCAAGGGTTTACGTACAAAGCGTGATGAACATGGGGGTATGTATGGTGACAGACCTTTAGAGGAGCAAACTATTCGAGTGTGTAAACGATTTTATGTGGCTCTCATCTTGTCAAGACTTGTTCAGGAAACACCCATTCCTGAAGTTTGTGAAGCTTTTAAAGTTGCCAGAGGGATGGTTCAAGCATTACAAGAGAGTGCCGGAAGGTTTGCATCTATGGTCTCCGTATTTTGTGAGAGACTTGGATGGCATGATCTGGAAGGTTTGGTAGCCAAGTTCCAAAATCGTGTATCATTTGGAGTTAGAGCAGAGATTGTAGAACTTACTAGTATTCCATTCGTTAAGGGTTCTCGTGCCAGAGCATTCTACAAAGCTGGTTTGCGGACACCTTTAGCAATTGCAGAAGCCTCTGATGCTGAAATAGTTAAAGCTCTTTTTGAGTCTGCATCATGGACTGCAGAAGAGAGTACAGCACAAAAACGGATGCATGTTGGAATAGCAAGGAAGATTAAGCTTGGTGCTCGTAAAGTTGTCCTGGACAAAGCTGAAGAGGCAAGGATTGCTGCATTCTCGGCTTTTAAATCATTGGGGTTTATTGTGCCACAAATTTCTCGTCCCTTGTCAGCAAGTGCAGTTGGAAATATAAGAGCTCAAGTGGCTGCAATTGTTCCCTCTGAAATTGATACTTTTAACAGAGTTGTTAGCACAACACAAATGGAGCATGTTTCATCTAAGTCTTGTGTTGGAGGAACTTCCAGTTCTGAAAAAATAGGTGGAAAGAACCTGAGTGAAACAGGAGCAATTTCTGTTGAAGTAAAACGGCCCACTTTTGGTGTTGAAAATACAAGGATGAAGGTTGAAGGGTCAGCAATCCAGGAGGCAAACAGTGTTGTTGACTGTGCAGGAAAGGTAGATGTTGCAATCGCTAATCAAGTGGAAAAAATTAATGATAAAGATGCTGAGAGGGAACAGTGTAGTATTAAAGTTTTGCATCCTCCCAAAAGAGACGGTCTTTCTATGAAAGGTCCTATCCATGCAGTTAGTACATCTGGCGGATTTGAATCTTTCTTGGACTTGTGGGATGCTACCCAAGAATTTTATTTTGATCTCTATTACACCAAACGATCTGAAGTGAACTCTGTTGTCCCCTTTGAATTACATGGAATAGCAATCTGTTGGGAAAATTCTCCGGTCTATTATTTGAACCTCCCAAAGGATTTGTTGTGGCCCAAGACTGGAAAAGGTTTTTATCCGGATGACAGCACACCTGGTGACCAGTTAGATGTTTCGCAATATGAACATTGGTTTGAGATTGTAGAAAAGAGATGGAAAAAGATCAATGAAATTTTTGTGAAAGAGAATGTCAGAAAGTTTGCCTGGAATTTGAAAGTTCAGATTCAGGTACTTAAATGTCCAGGAGTTTCCATCCAGAAATTGGGTTTATTGAATTCTGCTCGACGTAATATGGATCATAAACTTGTAGACGGTTCATACCTACTGCTGTCCAGTGTTCACATCAGCAATGGAATTGATATGTGCATTGTAGCTTGGATTCTTTGGCCAGATGACGAGAGAAATTCGACCCCTAACCTAGAGAAGGAAGTCAAGAAAAGATTATCTAGTGAAGCTGCTGCTGCTGCTAACCGAAGTGGCCAATGGAAGAATCAGATGAGAAGAGTAGCCCACAATGGTTGCTGTCGGCGTGCTGCACAGACACGAGCTCTATGTTCAGTTCTCTGGAAGTTAATAATTTCTGAAGAGCTCTTGAAAGCTCTCAACAATATAGAGATTCCATTGGTAAGTATTCTTGCTGATATGGAAACCTGGGGTATAGGTGTTGACATGGAGGGATGCATTCGGGCCCGTAATTTACTGGGGAAAAAACTCAGGTGCCTTGAGAAGGAAGCTTATAGGTTAGCTGGCATGACCTTCTCCCTGTACGCAGCAGCAGATATTGCTAATGTTCTATATGGTCATTTGAAGCTCTCTATTCCAGAGAGGTTCAACAAAGGCAAACAACATCCAAGTACTGACAAGCAATGTTTGGACTTGCTGAGGAACGAACACCCTATTGTTCCAGTCATTAAAGAGCACCGGACATTGGCGAAGCTTTTTAACTGTACTTTGGGATCCATTTGCTCACTAGCCAAGCTCTCTGCGAGGACACAGAAATACACGCTACATGGACATTGGCTCCAAACATCCACAGCAACTGGTCGGCTTTCCATGGAGGAGCCTAACCTTCAGTGTGTTGAGCATGCGGTAGATTTCAAAGTGAATGAAGATGATGTTGATCATTGTAAAATTAATGCTCGTGATTTTTTCGTCTCTACTCAGGAAAATTGGCTGCTCTTATCGGCAGATTATTCTCAGATAGAGTTGCGGCTGATGGCACATTTTTCAAAAGACCCCTCACTGATTGAACTTCTCAGCAAGCCTCATGGAGATGTGTTTACCATGATTGCTGCTAGATGGACAGGGAAGACAGAAGACTCTATTGGATCTCATGAGCGAGATCAGACCAAAAGGTTGGTATATGGAATCCTTTATGGAATGGGCGCCAAATCACTTGCATTACAACTGGAATGTAGTAGAGATGAGGCTGTGGAGAAAATTCAAAGTTTCAAAAGTTCTTTCCCTGGCGTGGCTTCCTGGCTTCATGAAGCGGTTGCATTTTGCCGTCAGAAGGGGTATGTTGAAACTCTAAAAGGAAGAAGGCGCTTCTTGTCAAAAATTAACTCTCCAAATAGCAAAGAAAAATCAAAAGCACAGAGACAAGCTGTGAATTCAATTTGCCAGGGTTCAGCGGCTGACATAATCAAAGTGGCTATGATCAACCTTTACTCCGTAATCAGATCCGACGCTCCAGATCTTACAGAGTCACCTGCAGCTAACAATAATATATTGAGGGGTCATTGTCGAATTGTATTACAGGTTCATATGCAGTTTCCATTTTCAAACTACTTAACTTTTTCAGTTGCCATGTTCGTTACTGCTATTCCACTTCATGTAGAATCAGTTTCAGTAATTGCGAAGATTTTTACTCAGGTGCATGATGAGTTAGTGCTGGAAGTGGACCCTTCCGTCGTTAAGGAGGCAGCAGCTTTGTTACAGAAGAGCATGGAAAATGCTGCCTCCCTTCTGGTTCCTTTGCAAGTCAAACTGAAAGTTGGACGAACATGGGGTTCTTTGGAGCCATTCTTGCTTGATCACTTCAAGATTGATGATCTTGTAACTGGATCTTGA 6603 42.5 MASGSPPSRIDQFYASKKRKPLTPSLKSGSYDKDGKRSLEGSPGTKGTLDNYLVTSQDLGNDNPSHSVRENLSGQELVKRNLLLKINSSSRNEHEEPTLSKGFHTSEATEGIKKRTLEDSYETRSSAVKSMASDWGVTPCMEKPELKQFAADFLSLYCSSELQTTVSSPVEQKVTFKRHSSPSLLDGEAKLPKKLHTMVGPSNAKGETDSLSALSDGNKQSKFFVETGDTDNHHPVALKACLQKCNKAPISPYCLTECRTPGLSTANACFRETPKSGSSSFSPGEAFWKEAIVFADGLCAPSIDLTSYDAEGSNPAEGQSNTKKLLIPGEPTQKRLKGQFGGGSGGVRLGEPGASIVSLRSDLKELNREVSSLPVKHFDFSADDKNLVESTSPSCASNESKVHAYELNEQSDCRYTTHDSPPKHNEKICDRDSLTKEKIHETKVTSSVPIVTEAKLNIFSPSDSITSDTLVHELRASTVQDSKEGMTPSSSIRHKDWLDLSYWLPREICSIYKEKGITKLHPWQVECLNVDGVLQRRNLVYCASTSAGKSFVAEILMLRRVISTGKMALLVLPYVSICVEKAAHLDVLLEPLDKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRLLEEGRLSEIGIIVIDELHMVGDQTRGYLLELLLTKLRYAGGEGNSDSSSGDSSGTSSGKSDPAHGIQIVGMSATMPNVAAVADWLQAALYHTDFRPVPLEEYIKVGNTIYNKSLDIVRTISKTANLGGKDPDHIVELCNEVVDEGHSVLIFCCSRKGCESTAKHVSKFLKKFSVKLHNENSEFADISSAIDALRRCPAGLDPILEETFPSGVAYHHAGLTVEEREIVETCYRKGLLRVLTATSTLAAGVNLPARRVIFRQPRIGRDFIDGTRYKQMAGRAGRTGIDTKGESVLICRPEEIKRINELLNESCPPLQSCLSEDKNGMTHAILEVVAGGIVQTATDIHRYVRCTLLNSTKPFQDVVKSAQESLRWLCHGKFLEWNGDTKLYSTTPLGRASFGSSLSPEESLIVLDDLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYERFMGLSSLDQSVGNRVGVTEPFLMHMAHGAPVRRANLSRNGVKGLRTKRDEHGGMYGDRPLEEQTIRVCKRFYVALILSRLVQETPIPEVCEAFKVARGMVQALQESAGRFASMVSVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTSIPFVKGSRARAFYKAGLRTPLAIAEASDAEIVKALFESASWTAEESTAQKRMHVGIARKIKLGARKVVLDKAEEARIAAFSAFKSLGFIVPQISRPLSASAVGNIRAQVAAIVPSEIDTFNRVVSTTQMEHVSSKSCVGGTSSSEKIGGKNLSETGAISVEVKRPTFGVENTRMKVEGSAIQEANSVVDCAGKVDVAIANQVEKINDKDAEREQCSIKVLHPPKRDGLSMKGPIHAVSTSGGFESFLDLWDATQEFYFDLYYTKRSEVNSVVPFELHGIAICWENSPVYYLNLPKDLLWPKTGKGFYPDDSTPGDQLDVSQYEHWFEIVEKRWKKINEIFVKENVRKFAWNLKVQIQVLKCPGVSIQKLGLLNSARRNMDHKLVDGSYLLLSSVHISNGIDMCIVAWILWPDDERNSTPNLEKEVKKRLSSEAAAAANRSGQWKNQMRRVAHNGCCRRAAQTRALCSVLWKLIISEELLKALNNIEIPLVSILADMETWGIGVDMEGCIRARNLLGKKLRCLEKEAYRLAGMTFSLYAAADIANVLYGHLKLSIPERFNKGKQHPSTDKQCLDLLRNEHPIVPVIKEHRTLAKLFNCTLGSICSLAKLSARTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHAVDFKVNEDDVDHCKINARDFFVSTQENWLLLSADYSQIELRLMAHFSKDPSLIELLSKPHGDVFTMIAARWTGKTEDSIGSHERDQTKRLVYGILYGMGAKSLALQLECSRDEAVEKIQSFKSSFPGVASWLHEAVAFCRQKGYVETLKGRRRFLSKINSPNSKEKSKAQRQAVNSICQGSAADIIKVAMINLYSVIRSDAPDLTESPAANNNILRGHCRIVLQVHMQFPFSNYLTFSVAMFVTAIPLHVESVSVIAKIFTQVHDELVLEVDPSVVKEAAALLQKSMENAASLLVPLQVKLKVGRTWGSLEPFLLDHFKIDDLVTGS 2200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3216285 3231737 - Carg08292-RA Car05g00549 148935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00549 2200 Pfam DNA polymerase family A 1737 2181 IPR001098 GO:0003677|GO:0003887|GO:0006260
Car05g00549 2200 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 762 954 IPR001650 -
Car05g00549 2200 Pfam DEAD/DEAH box helicase 533 706 IPR011545 GO:0003676|GO:0005524
Car05g00549 2200 MobiDBLite consensus disorder prediction 1 74 - -
Car05g00549 2200 Pfam Helicase conserved C-terminal domain 765 913 IPR001650 -
Car05g00549 2200 MobiDBLite consensus disorder prediction 671 692 - -
Car05g00549 2200 MobiDBLite consensus disorder prediction 89 111 - -
Car05g00549 2200 Pfam Helix-turn-helix domain 918 1008 IPR046931 -
Car05g00549 2200 MobiDBLite consensus disorder prediction 671 691 - -
Car05g00549 2200 MobiDBLite consensus disorder prediction 88 111 - -
Car05g00549 2200 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 530 722 IPR014001 -
Car05g00549 2200 MobiDBLite consensus disorder prediction 44 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00549 K02349 POLQ; DNA polymerase theta [EC:2.7.7.7] - csv:101215433 3670.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00549 Car-Chr5:3216285 Car13g00915 Car-Chr13:9441699 7.17E-27 dispersed
Car05g00549 Car-Chr5:3216285 Car04g00892 Car-Chr4:5116926 9.39E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g343 . . . . Bpe02g01197 . . . Cmo05g00632 . . Cma05g00730 . . . . . Bhi04g00821 . . . . . . . . . . . . . . . Cone17ag1106 . . . . Cme03g01725 . Blo18g00068 . . . . Bma01g01331 . . . . . . . Car05g00549 Cpe11g00651 . . . . . . . . Cla08g01238 Cam08g1696 Cec08g1275 Cco08g1396 Clacu08g1393 . Cre08g1178 Lsi08g01101 . Chy03g01230 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007306 0 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00549 Car_Chr05 FPKM 0.0 0.0 2.043495 1.981235 5.875463 4.888931 6.728763 0.624995 0.0 0.0