Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00562 ATGCTGCAGGCGGTAGAGCTTCAGCGATGGAAATCCGAGGAAGAACAGAGATTAGAGGAGGCGAGACATGCAGAGGAAGCTGCATTAGCGATGGTCGAGCAGGAAAAGGCGAAGTCTCGAGCTGCTATGGAGGCAGCTGAAGCATCTAAAAGGATTGCTGAGTTGGAAGCACGGAAGAGAATTAATGCGGAAATGAAAGCATTCAAGGAAGCAGATGAGAAGAAGAAGGCATTAGATGCTTTGGCAAACCAAGACGTCAGGTATCGGAAGTACTCGATCGAGGAGATCGAAGCTGCTACCGAGTTATTTTCAGAATCTTTAAAGATTGGAGAGGGAGGTTATGGGCCTGTTTATAAAGGTTATTTAGACCACACACCGGTTGCGATTAAGGTATTACGTCCCGATGCAGCTCAAGGAAGGTCACAGTTCCAGAAAGAGGTCGAAGTACTTAGCTGCATACGACATCCGAACATGGTTCTTCTCCTTGGAGCATGCCCTGAATATGGCTGCTTGGTCTATGAGTTTATGGGACATGGTAGCTTGGATGACTGCCTCTTTCTCCGGGGCGATAACTCGAGACCTCTTTCTTGGCAACGTAGATTCAAAATTGCAGCTGAAATCGGCACTGCCTTGTTGTTCCTCCACCAGACTAAGCCTGAACCGCTCGTGCACCGTGATTTGAAGCCAGCCAACATCTTGCTCGATAATAACTACGTTAGCAAGATTAGCGATGTCGGTTTGGCTAGGCTTGTTCCCCCATCTATAGCAGACAGTGTGACACAATATCGAATGACTTCAACCGCTGGCACATTCTGTTATATCGATCCCGAGTATCAACAAACCGGCATGCTCGGTGTAAAATCCGACATATATTCTTTGGGGATCATGTTTTTGCAGCTGATTACAGCAAAGCCACCCATGGGATTGACTCACCATGTGGAAAGAGCTATTGAGAAAGGGACTTTATCCGAAATTCTTGATCCATCTGTTACTGATTGGCCAGTTGAAGAAACCTCCTCCTTTGCAGAGTTGGCTTTAAAATGTGCAGAGTTGAGAAGGAAGGATCGACCCGATCTTTGTAAGGTCGTTCTCCCCGAACTCATCAAATTACAATCGCTAGCCGAAGCCAGCATGTACTCGTCGACGAGGGACGGCGTTTAG 1161 47.2 MLQAVELQRWKSEEEQRLEEARHAEEAALAMVEQEKAKSRAAMEAAEASKRIAELEARKRINAEMKAFKEADEKKKALDALANQDVRYRKYSIEEIEAATELFSESLKIGEGGYGPVYKGYLDHTPVAIKVLRPDAAQGRSQFQKEVEVLSCIRHPNMVLLLGACPEYGCLVYEFMGHGSLDDCLFLRGDNSRPLSWQRRFKIAAEIGTALLFLHQTKPEPLVHRDLKPANILLDNNYVSKISDVGLARLVPPSIADSVTQYRMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIMFLQLITAKPPMGLTHHVERAIEKGTLSEILDPSVTDWPVEETSSFAELALKCAELRRKDRPDLCKVVLPELIKLQSLAEASMYSSTRDGV 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3296013 3297286 + Carg08305-RA Car05g00562 148948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00562 386 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Car05g00562 386 Pfam Protein kinase domain 105 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00562 386 ProSiteProfiles Protein kinase domain profile. 103 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00562 386 Coils Coil 15 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00562 Car-Chr5:3296013 Car12g00884 Car-Chr12:8744495 0 dispersed
Car12g00262 Car-Chr12:1752480 Car05g00562 Car-Chr5:3296013 6.60E-157 dispersed
Car05g00562 Car-Chr5:3296013 Car09g00466 Car-Chr9:2597386 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88881 PF00069 Pkinase 1.60E-40 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00562 - - csv:101214468 637.876