Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00589 ATGGCTGTCAAAACAGCACAATCATTTAGAGATCGGACGCTGGAATTCCAGAACATAACAGAGAGGCTAAAGAAGTCTTTCTCATCTTGCACGGGAACAACTGGACCTAGTGCTGGTTCAAAGTCAGAAGAGCAGCGCTCTGCTGTGGCTCTTCAGTCTGAATTCAATAAGAGGGCTTCCAAGGTTGGATTAGGGATACACCAGACGTCTCAGAAACTCTCAAAGTTGGCAAAATTGGCAAAGAGGACTTCAGTTTTTGATGACCCAACAATGGAAATTCAGGAGCTAACTGCTCTTATTAAGCAGGACATTACAACCTTGAACTCTGCCGTTGTAGATCTTCAGCTTCTCTGCAACTCTAGAAATGAAAATGGAAACATATCCAGTGATACTACTAGTCATTCAACCACTGTGGTAGATGATCTTAAGAATCGACTGATGAGCACCACGAAAGAGTTTAAAGAAGTTCTAACCATGCGAACTGAAAATTTGAAGGTTCATGAGAACAGAAGACAACTATTTTCTTCTACTGCTTCAAAGGAATCTACCAATCCTTTTGTGCGCCAGCGTCCATTAGCTTCCAGGTCAGCTGCTGGTGCCTCAAGTGCGCCCCCTCCTCCATGGGCCAAGGCGTCCACATCTTTTTCTAAAACATCTCCCGGGAAGCAGGTGGATGGGGAGAGTCAACCATTGTTACAGCAGCAGCAGCAACAGCAGCAGATGGTTCCGTTACAAGACACTTACATGCAGAGCCGAGCTGAAGCTCTTCAAAATGTAGAATCCACCATTCATGAATTGAGCAATATCTTCAACCAGCTGGCCACTCTGGTTTCTGAACAAGGAGAGATTGCTATCAGGATCGACGAGAACATGGACGATACTCTGTCAAATGTGGAGGGGGCACAGGGAGCATTGCTCAAGTATCTAAACAGTATATCATCAAATAGGTGGCTGATGATCAAAATTTTCTTTGTACTAATATTCTTCCTCATGGTTTTCCTATTTTTTGTGGCATAG 1017 44.05 MAVKTAQSFRDRTLEFQNITERLKKSFSSCTGTTGPSAGSKSEEQRSAVALQSEFNKRASKVGLGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTALIKQDITTLNSAVVDLQLLCNSRNENGNISSDTTSHSTTVVDDLKNRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSTASKESTNPFVRQRPLASRSAAGASSAPPPPWAKASTSFSKTSPGKQVDGESQPLLQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSEQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3439963 3445466 + Carg08332-RA Car05g00589 148975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00589 338 MobiDBLite consensus disorder prediction 168 242 - -
Car05g00589 338 MobiDBLite consensus disorder prediction 170 190 - -
Car05g00589 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Car05g00589 338 Pfam SNARE domain 282 334 IPR000727 -
Car05g00589 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Car05g00589 338 MobiDBLite consensus disorder prediction 207 242 - -
Car05g00589 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 25 IPR021538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00589 Car-Chr5:3439963 Car17g01008 Car-Chr17:8021846 1.09E-06 dispersed
Car12g00284 Car-Chr12:1869253 Car05g00589 Car-Chr5:3439963 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00589 K08490 - csv:101203633 536.184