Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00598 ATGTCTTTGGACTTCCATCCAAAGAAGGAGGACTTTATTTGCTCGTGTGACGGTGACGGTGAGATTCGATACTGGAATATCACTAATGGCAGCTGTGCAGCAGTATTCAAGGGCGGTACTGGCCAGTTGAGATTTCAACCTCGGCTCGGGAGATACTTCGCTGCTGCTGTAGATAATATCGTTTCAATTTTTGATGTCGAGACACAAGCTCGTCTGCATTCGTTTCAGTCATTAGAGCTTTGGAACACGACCGAAAACAAGACAATGTTCGTATCAGCTCATGAAGGTTTAATATCTTCGTTAGCAGGGTCTACAGCATCGGGTCTGGTCGCTTCGGCCAGCCACGACAAGTTCATCAAGCTGTGGAAGTAA 372 46.51 MSLDFHPKKEDFICSCDGDGEIRYWNITNGSCAAVFKGGTGQLRFQPRLGRYFAAAVDNIVSIFDVETQARLHSFQSLELWNTTENKTMFVSAHEGLISSLAGSTASGLVASASHDKFIKLWK 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3538585 3539953 - Carg08341-RA Car05g00598 148984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00598 123 ProSiteProfiles Trp-Asp (WD) repeats profile. 91 123 IPR001680 GO:0005515
Car05g00598 123 Pfam WD domain, G-beta repeat 90 123 IPR001680 GO:0005515
Car05g00598 123 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 91 123 - -
Car05g00598 123 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 35 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00598 - - - gab:108462443 170.629
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00598 Car10g00546 CCT
Car05g00598 Car10g00546 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00598 Car-Chr5:3538585 Car10g00546 Car-Chr10:2744888 7.10E-29 dispersed
Car12g00293 Car-Chr12:1921325 Car05g00598 Car-Chr5:3538585 5.65E-21 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g426 . . . . . . . . Cmo05g00686 . . Cma05g00654 . . Sed01g1339 Cpe07g00273 . Bhi04g01022 Tan02g2682 Cmetu03g2197 . Hepe10g0285 . Lcy13g1301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car05g00598 Cpe11g00581 . . . . . . . . . . . . . . . . . . .
Vvi11g402 . . . . Bpe01g00505 . . . . . Cma05g00654 . Car05g00598 . Sed08g0737 . Cpe18g00457 Bhi02g01088 Tan09g1333 Cmetu05g0271 . . . . . . . . . . . Cone2ag0275 Cone16ag0764 . . . . . Cme02g01301 . Blo14g00816 . . . . . . . Cmo05g00686 . Cma10g00591 . Car10g00546 . . . . . . . . . . Cla06g01040 Cam06g1163 Cec06g1202 Cco06g1207 Clacu06g1122 Cmu06g1095 Cre06g1902 . Csa01g02090 Chy02g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025773 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00598 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.284197