Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00599 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTAGATGTGTATATTCACGATTATTTGGTAAAAAGAGATATGAAGGCTACTGCTCAGGCTTTCCAAGCAGAGGGAAAAGTCTCTTCGGAGCCTGTGGCGATCGATGCGCCTGGAGGCTTTCTTTTCGAATGGTGGTCGGTTTTCTGGGATATATTCATTGCTAGAACCAATGAGAAACACTCTGATGTTGCTGCATCTTATATTGAGACACAATTAATAAAAGCTAGAGAGCAACAGCAACATCAGCAACATCAACAGCAGCAGCAGCAGCAGCAAACACAGCCACAACAACAGCAACCGCAACACATGCAGATGCTACTGATGCAGAGACATGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAGCAACAGCATCAACAGCAACAGCAGCCACAGCAGCAACAACAACAGACTCAGCAACAGCAACAGCAGCGGAGAGATGGAGCCCAACTCTTAAATGGTACTTCAAATGGTTTTGTTGGAAATGATCCTCTTATGCGCCAAAATCCCGGTTCTGTGAATGCATTGGCTACAAAAATGTATGAGGACAGATTAAAACTGCCCCTTCAGAGGGATTCACTCGATGATGCGGCTATGAAACAAAGGTATGGTGAAAATGTTGGGCAGCTGTTAGATCCAAATCATGCTTCGATTCTGAAGTCAGCTGCAGCAACCAGCCAGTCGTCAGGGCAAGTGTTACATGGTGCAGCTGGGGGAATGTCTCCTCAAGTTCAATCGAGGAGCCAACAATTGCCAGGTTCCACACCGGATATAAAGAGTGAGATCAACCCAGTTTTGAATCCTAGAGCTGAGGGATCACTGATGGGTATTCCTGGATCAAATCATGGTGGCAATAATTTGACCTTAAAGGGATGGCCCCTCACTGGACTCGATCAGCTACGTTCTGGGATCCTTCAGCAACCGAAACCTTTCATACAGGCTCCTCAACCTTTTCCTCAGCTTCAGATGTTGACACCGCAACACCAACAACAACTTATGCTCGCACAACAGAATTTAACGTCACCTTCTGTTAACGATGATGGTAGAAGATTGAGAATGCTTTTGAATAGTCGAATGACGAAAGATGGACTTCCAAATTCTGTTGGTGATGTTGTTCCAAATGTTGGATCTCCTCTCCAAGCTGGCAGTCCTCTCCTGCCCCGTGGAGACAACAATGACATGATGATTAAGATTAAAATGGCTCAATTGCAGCAGCAACAACAGAATAGCAGCCAACAACAACAACAACAGCAGCATTCTCTTTCAAATCAACAATCACAAAGTTCAAACCACAATATGCACCAGCAAGAAAAAATCGGGGGTGCTGGCAGCGTCACCATGGATGGTAGCATGACAAACTCATTTCGTGGAAATGATCAGGTTTCAAAAAATCAGCCTGGGAGAAAAAGGAAGCAGCCATTGTCGTCTTCAGGTCCAGCAAATAGCTCAGGAACAGCGAATACAGCAGGTCCATCCCCAAGTTCTGCTCCTTCAACTCCCTCAACTCACACACCTGGAGATGCAATCTCAATGCCTGCTTTGCCTCACAGTGGTAGTTCATCTAAACCTTTGATGATGTTCAGTAGCGACGGCACTGGCACTTTTACATCCCCCTCGAATCAGTTGTGGGATGATAAAGAAATTGAATTGCAGGCTGATATGGAACGCTTTGTGGAGGATGGGTCTCTTGATGACAACGTCGACTCTTTTTTATCCCATGATGATACGGACCCTCGAGATCCTGTAGGGCGCTGTATGGATGGTGGAAAAGGATTCACGTTTACGGAGGTGAATTCTGTTCGAGCAAGCACGAGCAAAGTTTCCGCTTGCCACTTTTCATCGGATGGAAAACTGCTTGCTAGTGGTGGCCATGATAAAAAGGCCGTGTTGTGGTACACAGAAAATTTAAAACCGAAAACTTCACTTGAAGAACATCTTTCCATGATCACTGATGTTCGTTTTAGTCCTAGCATGCCCCGTCTCGCAACATCATCGTTCGATCGAACAGTCAGGGTTTGGGATCCCGACAATGTTAGTGATCATCTATCTGTCTTTCTCTCGAGTCTTTATTCCTTAATTATTGGTCTTGCATCATTCAAATAA 2145 45.45 MSQTNWEADKMLDVYIHDYLVKRDMKATAQAFQAEGKVSSEPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKAREQQQHQQHQQQQQQQQTQPQQQQPQHMQMLLMQRHAQQQQQQQQQQQQQQQHQQQQQPQQQQQQTQQQQQQRRDGAQLLNGTSNGFVGNDPLMRQNPGSVNALATKMYEDRLKLPLQRDSLDDAAMKQRYGENVGQLLDPNHASILKSAAATSQSSGQVLHGAAGGMSPQVQSRSQQLPGSTPDIKSEINPVLNPRAEGSLMGIPGSNHGGNNLTLKGWPLTGLDQLRSGILQQPKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLTSPSVNDDGRRLRMLLNSRMTKDGLPNSVGDVVPNVGSPLQAGSPLLPRGDNNDMMIKIKMAQLQQQQQNSSQQQQQQQHSLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMTNSFRGNDQVSKNQPGRKRKQPLSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGSSSKPLMMFSSDGTGTFTSPSNQLWDDKEIELQADMERFVEDGSLDDNVDSFLSHDDTDPRDPVGRCMDGGKGFTFTEVNSVRASTSKVSACHFSSDGKLLASGGHDKKAVLWYTENLKPKTSLEEHLSMITDVRFSPSMPRLATSSFDRTVRVWDPDNVSDHLSVFLSSLYSLIIGLASFK 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3540076 3545067 - Carg08342-RA Car05g00599 148985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00599 714 Coils Coil 85 105 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 89 123 - -
Car05g00599 714 Pfam LisH 10 36 IPR006594 GO:0005515
Car05g00599 714 Pfam WD domain, G-beta repeat 652 688 IPR001680 GO:0005515
Car05g00599 714 Pfam WD domain, G-beta repeat 614 645 IPR001680 GO:0005515
Car05g00599 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 655 IPR001680 GO:0005515
Car05g00599 714 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 688 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 460 520 - -
Car05g00599 714 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Car05g00599 714 MobiDBLite consensus disorder prediction 145 185 - -
Car05g00599 714 Coils Coil 122 143 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 412 453 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 255 275 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 375 541 - -
Car05g00599 714 MobiDBLite consensus disorder prediction 243 278 - -
Car05g00599 714 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 688 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00599 - - - cpep:111805531 974.541
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00599 Car-Chr5:3540076 Car14g01690 Car-Chr14:13441132 6.54E-44 dispersed
Car05g00599 Car-Chr5:3540076 Car12g00293 Car-Chr12:1921325 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g428 . . . . . . . . . . . . . . . . . Bhi04g01021 Tan02g2683 . . . . . . . . . . . . . . . . . . . . . . Bda01g00984 . Bpe14g00568 . . . . . . . . . Car05g00599 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003018 4 4 2 1 1 1 2 1 1 1 1 1 1 1 1 3 1 5 3 1 1 1 1 1 1 1 1 4 3 3 53
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3566 PF00400 WD40 1.00E-05 CL0186 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00599 Car_Chr05 FPKM 9.309358 10.873385 9.542878 9.16695 11.385532 13.0842 10.77098 10.125136 10.268853 9.217791