Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00618 ATGGATAGCCCTTTGACATCGATCTCAGCCCCTAATTCCTCACCTGTTTCGAATCCTGGTTCGAATGATGAAAACCCGCGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGTTATGTTGGGGGAGAGACAAGGATTGTGAGTGCTCCAAGGGATATTACATATGAGGAGTTGATGGTTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCTTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCAGGTGACGGATTCACTAGGCTCAGGATATTCTTGTTTTCGAATCCAGAACAAGAATGTTCCTTGCCTTTTGTGGATGGGGATGAGAGGGATACTGAGAGGCGATATGTAGATGCTCTTAATAATTCGAATGACGTGAATGATTTTGTTCGGCAACAGCAGCCAGATTCCCCTGTAATTAGTGGCATAGATGATGTGCACGGGATAGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACCCAGAGGAGTTGTGAGCCCTTGTCACAATATCAGCTGCATCAGCTCGCAGTCCCTTATATTGGATCTGGGCAGCAACAACAATCTGTGGCTCAAAGGTATAGTGAAATGGAAGCTCCGTGGAGTCCTGCTTTCGTTTCACCCAGGCATCCTGGTCTGTATGATCCAAGACCAGTGGGAGAATATCCATCTTCTCCATCTGCATGGTACCGTCTGCCATTCCCTGATTTTCCAGATAAATACTTCGAAAGAATGCCTGAAGACTACGCCAGGGAGCAAATGAATCACCAGTATATGTATGAACATCAACCACAATCTAATGAGAACATTGTCTGGCTGCCAAATGGACCTATTAGTGAAAAGTCAGGTTTCCCTGGTAATATATTACACGGACATGGTGTTCCTGATGGGAATAGTTCTTGTGAACACTGTCGATCAAATTATCATCGGTATCAAACACACATGGAGCAAGCTAATATGTTAAATGGACTTCCTCATGAATACTCTCAGAATAGGGAGGCATTGATGCAAAAGGCTGACACGAAGTTCCATCATGGTATTTTCCCAAATGAGCAGAATATTAATGATCCTCGATCTGCTTATAACGAGACACCACCCCATGAGAGAGGATGGATTATGCAACACCAAATGAGCGTGCGGGGGGATGACACGAGAACATATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCAAGCTTCCATGAATTTTCATGATGAGGTATTTCGTGACCAGGTTGTGCCCAGTGGGCAACATATGTGTGTTCCTCCTCCTGAAGATCGTGGTGTTGGTTATATGAATATGCCTTATGGATATGGAGCAGATCCTCAATATCCTCCTGTGGCACACAGGCATATGCCTGGAAATGCTGCCTGGCGAAATGTTCAGAACCCGTCACATGTTGCTCCTCCTTATGAAGCATCTGTTTCCATTCAGCAAGGGAATGTGACTGTTAATCCAGGATATATCAGAGCCATGCAGGAGGGTAGTCCCCGCATTCATATTGGTACGGACCATCAAAATCCTTGGCATGAATCCTCACAAAAAATGTTGGGTATTGAGGGAGCAACTGGTTCAGAGCATTTACCTGCACTTGTTTTGAAGACCAATTCGACCATGGTTGGCCATGACAATCAACAATTCACAAATCTAGAACATGTCCAACCACATCTAGATAAGATAAACCTCGTCGCTTCTGCTTTGCAGAGATCAGATTCATCTTCAGCATTTATTCATGAAAAAATGATTTCACCTTTTAATCCTAGCCAAAATCCACAACCGAGGACTGTTAGTGTGATTAATGAAGCTATGATGATGGAAAGGAAAATTGTGCCTGGGGAAGGAAACGAACACATGATAACTGATATGGGGGAAGCTGACATTTCTGAAGCACGCGTTGTATCTCATCCAGAGCAGAATAACACTGATGATACATATTCCAAGGATGTACCCCCTGAATCGTTAAATTCAAATTGCACGAACACTCCAGTAGATAATGGTGATGACTTGAAATCTGCTGTAGAGACTCTTGAAAATCCAAAACTATCTGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGAAAAGAGCAGCATTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCTAAGGGGACCTGATTCAGTAGGAAAAAAAGAGACAGCTAATGAGCTAGGCTCCTTGAACGCCCATGGGGAACCTGAGTTGGAAACTGGGAGTGAGAATCAAAGCTCCACAATTGAGCCAACAAAGGCTGAAGAAGAAGCCATTTCAAGAGGATTACAAACGATTAACAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTATCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATAAAAGCTAGCTGTTTTTCTGGACGACCCTCAGAAAGGGAACGTCTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCCTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGATGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTAAATGGATCATTGAAACAGTTTTTGCACAAGAAGGACAGGACAATCGATCGTCGTAAGAGACTAATTATAGCCATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTCGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGATCCTCAGAGGCCTGTTTGCAAGATCGGTGATTTGGGATTGTCGAAGGTGAGACAACACACGTTAGTATCGGGAGGGGTTCGTGGAACTTTACCCTGGATGGCACCCGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATTGATGTTTACTCATTTGGGATTGTTATGTGGGAAGTACTCACGGGAGATGAACCGTATTCAGATATGCATTGTGCTTCTATAATCGGAGGAATCGTAAACAATTGTTTACGTCCAGAAATCCCGACATGGTGCGACCCGGAATGGAAGGCTTTAATGTCAAGCTGCTGGGACTCAGACCCAGCTATGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATGTGAAATAG 3315 43.26 MDSPLTSISAPNSSPVSNPGSNDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSAPRDITYEELMVKMRELYDGAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSNPEQECSLPFVDGDERDTERRYVDALNNSNDVNDFVRQQQPDSPVISGIDDVHGIEHFLNPMNIEGSLHTQRSCEPLSQYQLHQLAVPYIGSGQQQQSVAQRYSEMEAPWSPAFVSPRHPGLYDPRPVGEYPSSPSAWYRLPFPDFPDKYFERMPEDYAREQMNHQYMYEHQPQSNENIVWLPNGPISEKSGFPGNILHGHGVPDGNSSCEHCRSNYHRYQTHMEQANMLNGLPHEYSQNREALMQKADTKFHHGIFPNEQNINDPRSAYNETPPHERGWIMQHQMSVRGDDTRTYVSGAGRLNDHYIVDGSGSNFPPTQSNITDGYQASMNFHDEVFRDQVVPSGQHMCVPPPEDRGVGYMNMPYGYGADPQYPPVAHRHMPGNAAWRNVQNPSHVAPPYEASVSIQQGNVTVNPGYIRAMQEGSPRIHIGTDHQNPWHESSQKMLGIEGATGSEHLPALVLKTNSTMVGHDNQQFTNLEHVQPHLDKINLVASALQRSDSSSAFIHEKMISPFNPSQNPQPRTVSVINEAMMMERKIVPGEGNEHMITDMGEADISEARVVSHPEQNNTDDTYSKDVPPESLNSNCTNTPVDNGDDLKSAVETLENPKLSVSRLSFLPELIASVKRAALEVSEEAMVEETALRGPDSVGKKETANELGSLNAHGEPELETGSENQSSTIEPTKAEEEAISRGLQTINNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFSGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWEVLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAMRPSFSEISQKLRNMAAAMNVK 1104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3666022 3671242 + Carg08362-RA Car05g00618 149004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00618 1104 ProSitePatterns Serine/Threonine protein kinases active-site signature. 956 968 IPR008271 GO:0004672|GO:0006468
Car05g00618 1104 MobiDBLite consensus disorder prediction 790 823 - -
Car05g00618 1104 Pfam PB1 domain 43 127 IPR000270 GO:0005515
Car05g00618 1104 MobiDBLite consensus disorder prediction 694 721 - -
Car05g00618 1104 MobiDBLite consensus disorder prediction 798 813 - -
Car05g00618 1104 ProSiteProfiles Protein kinase domain profile. 831 1097 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g00618 1104 ProSitePatterns Protein kinases ATP-binding region signature. 837 858 IPR017441 GO:0005524
Car05g00618 1104 Pfam Protein tyrosine and serine/threonine kinase 832 1094 IPR001245 GO:0004672|GO:0006468
Car05g00618 1104 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00618 Car-Chr5:3666022 Car18g00264 Car-Chr18:1526836 1.43E-29 dispersed
Car16g00802 Car-Chr16:5252731 Car05g00618 Car-Chr5:3666022 2.00E-34 dispersed
Car05g00618 Car-Chr5:3666022 Car06g01086 Car-Chr6:8151950 1.42E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88882 PF07714 PK_Tyr_Ser-Thr 2.00E-61 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00618 - - cmax:111492314 2237.22