Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00623 ATGCACTCCTTCGCCGGCGGCTGGCCTGCCGTCGCCACAGCCAAACCCCTCTGCTACTCCTGCAAGTCTGCACCCGCTGCCCTCTTCTGCCGCCACGACGCCGCTTTCCTCTGCCTTCGCTGTGACGCCCAAATCCACTCCCACACCACCGGCACGCGCCACCCACGTGTCTGGCTCTGTGAGGTCTGCGAGCAAGCTCCTGCTACCATCACCTGCAATGCCGACGCTGCCTCTCTCTGTCCCTCTTGCGATGCCGACATCCACTCTGTTAACCCCCTTGCTCGCCGCCACGATCGCTCTGCTATCCAACCCTTCTACGACTCACCCCCCTCCGCCTCCGTTGCCTCTGTCTTCAAATTCCTCCTCCCGACTCAACACCAACATGACGTCGGCCACCCTGATTTGAAATCCGAGGACATCTTCTTCTCCGATATGGATTCGTTGATCGATTTCGATTACCCAACTGCCGGCGACGGAGTTGTGCCTGATCAATCCAATCCTGGAACAGAGTCCACTACGCAACCCACCGATTACTCCACCGGAAACTTCTGCGGTTTCGAGCTCTGTAGTACTCGATCTAAACTCGACGCCATTAGCTACCCATCTCATAATCTTAGCCATAGCGTCTCGTCGTCTTCCTTAGACGTGGTTGCTGTGCCAGATCGGAACACGGCCTCCGACGCGTCGTATCCAGCGGGACAAACAGCGCTTCCTACGACGGAGAAGGCTGTCCAATTACGGGGAATGGATCGGGAGGCGAGGGTGTTGAGGTACAGAGAGAAGAAGAAAAATCGGAAATTTGAGAAGACGATTCGGTACGCTTCAAGGAAAGCTTATGCAGAAATTCGGCCAAGGGTTAAAGGGCGGTTCGTTAAACGGAGTGAAATGAAGTCGGAAATGGAGAGAATGTACGCCGGAGCCGGCGTGGGGTACATGTCGAGGGACGGCCAATACGGCATCGTTCCAAGCCTTATAGTTTGA 981 55.96 MHSFAGGWPAVATAKPLCYSCKSAPAALFCRHDAAFLCLRCDAQIHSHTTGTRHPRVWLCEVCEQAPATITCNADAASLCPSCDADIHSVNPLARRHDRSAIQPFYDSPPSASVASVFKFLLPTQHQHDVGHPDLKSEDIFFSDMDSLIDFDYPTAGDGVVPDQSNPGTESTTQPTDYSTGNFCGFELCSTRSKLDAISYPSHNLSHSVSSSSLDVVAVPDRNTASDASYPAGQTALPTTEKAVQLRGMDREARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSEMKSEMERMYAGAGVGYMSRDGQYGIVPSLIV 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3704738 3706000 + Carg08368-RA Car05g00623 149009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00623 326 Pfam CCT motif 251 293 IPR010402 GO:0005515
Car05g00623 326 MobiDBLite consensus disorder prediction 156 177 - -
Car05g00623 326 MobiDBLite consensus disorder prediction 162 177 - -
Car05g00623 326 Pfam B-box zinc finger 15 50 IPR000315 GO:0008270
Car05g00623 326 Pfam B-box zinc finger 57 100 IPR000315 GO:0008270
Car05g00623 326 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Car05g00623 326 ProSiteProfiles Zinc finger B-box type profile. 13 59 IPR000315 GO:0008270
Car05g00623 326 ProSiteProfiles CCT domain profile. 251 293 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00623 Car10g00391 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00898 Car-Chr2:6373712 Car05g00623 Car-Chr5:3704738 6.52E-101 dispersed
Car05g00623 Car-Chr5:3704738 Car14g01014 Car-Chr14:8520047 1.46E-06 dispersed
Car10g00391 Car-Chr10:1943234 Car05g00623 Car-Chr5:3704738 4.01E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3567 PF00643 zf-B_box 1.90E-06 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00623 - - cmax:111492359 635.18