Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00661 ATGAAGACAGGTCAAAAGTGGCAATTAGAAATGGGCGATATGAAAATTCTGCCCGGTCCTCGATCTCGTACTACCAAGAGACCGTTATGGATTATTATCTTGGTTTCTATGGTTAGTGTGTTCCTAATATGTGCCTATATCTATCCACCCAATGGGACAGGTGCCTGTTACATATTTTCTTCGAAGGGCTGCAAGGTTATTACTGACTGGCTCCCACCTGCACCTGCAAGGGAATGTACTGATGCTGAGATTGCATCACGTATTGTTATTAGAGAAATCTTGAACATGCCATTCGTCGCGTTAAAAACTCCTAAAATTGCATTCATGTTCATGACTCCTGGTTCCCTGCCTTTTGAGAAGCTATGGGATAAGTTTTTCCATGGCCATGAAGGGAAATTCTCTGTTTATGTCCATGCATCTAAGGAAAAGCCGGTGCACGTTAGCCGTTACTTCGCTGGTCGTGAAACTCATAGCAATGAGGTCATTTGGGGTAAAATCTCCATGGTTGATGCAGAGAGACGATTGTTAGCAAATGCTCTCCATGATCCTGATAATCAGCACTTCGTTTTACTTTCTGATAGTTGTGTACCATTGCATAATTTTGATTATATCTACCAGTATTTGATTAATACAAATATCAGCTATGTAGATTGCTTTAACGATCCTGGTCCGCACGGAAACGGGAGGTATTCGGAGCACATGTTACCTGAAATTGAGATGAAAGACTTCAGAAAGGGTGCTCAGTGGTTCTCGATGAAGCGACAACACGCTTTGATTGTCGTGGCTGACAATCTTTACTATTCAAAATTTCGAGATTATTGCAAGCCAGGTCTGGAGGGACACAATTGCATTGCAGATGAGCATTACTTGCCCACCTTTTTCCATATGACAGATCCTGGAGGGATTGCAAACTGGTCAATTACTCACGTTGATTGGTCTGAAAGAAAGTGGCATCCAAAGTCGTACGGGGCTGAAGATGTTACCTACGAACTTCTACAAAATATCACGTCAATCGATGTCAGCGTGCACGTTACAAGCGACGAGAGGAAGGAAGTGCAAAGATGGCCATGCTTATGGAACGGTGTACACAGGCCATGTTACTTGTTTGCAAGGAAGTTCTATCCAGAGGCTCTAAATAACCTTCTGAATCTCTTCTCCAACTACTCATCAATTTCAGACTAA 1182 42.64 MKTGQKWQLEMGDMKILPGPRSRTTKRPLWIIILVSMVSVFLICAYIYPPNGTGACYIFSSKGCKVITDWLPPAPARECTDAEIASRIVIREILNMPFVALKTPKIAFMFMTPGSLPFEKLWDKFFHGHEGKFSVYVHASKEKPVHVSRYFAGRETHSNEVIWGKISMVDAERRLLANALHDPDNQHFVLLSDSCVPLHNFDYIYQYLINTNISYVDCFNDPGPHGNGRYSEHMLPEIEMKDFRKGAQWFSMKRQHALIVVADNLYYSKFRDYCKPGLEGHNCIADEHYLPTFFHMTDPGGIANWSITHVDWSERKWHPKSYGAEDVTYELLQNITSIDVSVHVTSDERKEVQRWPCLWNGVHRPCYLFARKFYPEALNNLLNLFSNYSSISD 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4116509 4122240 + Carg23930-RA Car05g00661 149047

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00661 393 Pfam Core-2/I-Branching enzyme 106 335 IPR003406 GO:0016020|GO:0016757
Car05g00661 393 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 4 390 - -
Car05g00661 393 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 4 390 IPR044174 GO:0016757
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00661 - - - csv:101219592 794.653
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01334 Car05g00661 CST
Car05g00661 Car12g00861 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00661 Car-Chr5:4116509 Car14g01132 Car-Chr14:9982274 4.02E-80 dispersed
Car12g00269 Car-Chr12:1783918 Car05g00661 Car-Chr5:4116509 1.47E-163 transposed
Car10g00362 Car-Chr10:1779178 Car05g00661 Car-Chr5:4116509 3.06E-66 wgd
Car11g00349 Car-Chr11:1921713 Car05g00661 Car-Chr5:4116509 0 wgd
Car12g00861 Car-Chr12:8390922 Car05g00661 Car-Chr5:4116509 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g116 Blo01g01457 . . . . . . Bma01g02206 . . Cma01g01718 . . . . . . . . . . . . . Cla05g01850 . . . . . . Cone4ag1678 Cone7ag1274 . . Lsi04g01409 . . . . . . . . . . . . Cmo01g01793 . . . Car01g01334 Car05g00661 . Cpe02g00275 Bhi09g03124 . . . . . . . . . . . . . . . . Cme07g00204
Vvi11g903 Blo01g00733 Blo16g00843 Bda01g01902 Bda11g00105 . Bpe02g02024 . . Cmo10g00411 . Cma05g00709 Cma12g00904 Car05g00661 Car12g00861 . Cpe04g01315 . Bhi02g00723 . . . . . . Cla11g01155 Cam11g1209 Cec11g1226 Cco11g1219 Clacu11g1373 Cmu11g1198 Cre11g1613 Cone2ag0679 Cone16ag0312 Cone11ag0197 Cone18ag1288 . Csa02g00658 Chy05g00878 . . . . . . Bpe13g01106 Bma01g00441 Bma06g01019 Sed11g0568 Cmo05g00746 Cmo12g00909 Cma10g00383 . . . Cpe11g00622 Cpe07g00749 Bhi06g01230 Tan08g0872 Cmetu05g0061 . Hepe08g2103 . . . . . . . . . Lsi11g00784 . . Cme05g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000821 3 8 2 2 3 2 4 2 2 2 2 2 4 3 3 4 2 5 5 2 3 3 2 2 3 2 2 6 4 2 91
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00661 Car_Chr05 FPKM 4.815405 6.28137 2.058699 1.726402 0.608123 0.524948 0.922326 19.71726 19.222702 22.607758