Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00671 ATGGAGAACATTCTCGACGAGTATCAGTACTACTGGGAAACGAACATGTTTCTGCAGACGGAAGAGTTCGACAGTTGGGGAGTGGACGAAGCGTTTTACGGTTCTTACGATTCAAGCTCGCCGGACGGAACGCCGTCGTCGTTAGAGGCGTCGAAGAACATCTTGTCGGAGAGGAATCGGAGGAAGAAGCTGAACGATAGGCTTCTGGCTCTCAGAGCTGTGGTCCCTAATATCACCAAAATGGACAAGGCATCGATAATAAAAGACGCGATCGAGTACATCCAGGAGCTGCGAGCGGAAGAGAAGAGAATCGAAGCGGAGATCTCAGATCTGGAATCAGGCAAAATCAAGAACAGAGCAACAAACGAAGACGATGACGGAATCTTGAGGGAGAAGAGAACGAATAAGAATCGGCAAGTACCGGAGCCGCCGCCGTCTTTCCCGATCGAAGTTCTCGACTTGAGGGTGAATTACATGGGAGAGAAGACGATGGTGGTGAGCTTGACGTGCGGAAGAAGGAGCGACACCATAATGAAAATCTGCCAAGTTATTGAATCGCTTAAGATGAAGATTATTACGGCCACCATCACCATTGTTGCCAACAAGCTTTTGATCACGCTCTTCCTTGAGGTCAGTCCTCTGTTTTTGTTTTTTTTATTTTCTAGAATCCCATCACCTGTAGAGCTCTGA 690 47.83 MENILDEYQYYWETNMFLQTEEFDSWGVDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAEEKRIEAEISDLESGKIKNRATNEDDDGILREKRTNKNRQVPEPPPSFPIEVLDLRVNYMGEKTMVVSLTCGRRSDTIMKICQVIESLKMKIITATITIVANKLLITLFLEVSPLFLFFLFSRIPSPVEL 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4206214 4207896 + Carg23940-RA Car05g00671 149057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00671 229 MobiDBLite consensus disorder prediction 117 144 - -
Car05g00671 229 Pfam Helix-loop-helix DNA-binding domain 55 97 IPR011598 GO:0046983
Car05g00671 229 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Car05g00671 229 Coils Coil 87 114 - -
Car05g00671 229 MobiDBLite consensus disorder prediction 117 138 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00671 Car10g00353 CCT
Car05g00671 Car11g00332 CCT
Car05g00671 Car12g00870 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00671 Car-Chr5:4206214 Car20g00464 Car-Chr20:2587922 3.16E-22 dispersed
Car10g00353 Car-Chr10:1741309 Car05g00671 Car-Chr5:4206214 1.29E-74 wgd
Car11g00332 Car-Chr11:1815961 Car05g00671 Car-Chr5:4206214 1.53E-70 wgd
Car12g00870 Car-Chr12:8484802 Car05g00671 Car-Chr5:4206214 2.72E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3569 PF00010 HLH 6.60E-11 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00671 - - cmo:103492501 322.783