Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g00698 | ATGGCATCCACCTCCTCCAATTCGCCCTGTGCTGCTTGCAAATTCCTCCGCCGTAAATGCCAACCGGAATGTGTTTTCGCGCCCTATTTCCCGCCGGATCAGCCTCAGAAATTCGCGAATGTTCATAAGGTATTCGGCGCTAGTAATGTCACTAAACTTCTCAACGAATTGCATCCTCACCAGCGGGAAGATGCTGTTAATTCTCTCGCTTATGAAGCCGATATGCGTCTCCGTGATCCTGTTTATGGCTGTGTTGGAGTAATTTCTCTGCTTCAACATCAACTCTGTAAACTCCAAATGGATCTCACTTCCGCTAAATCCGAACTCTCTAAGTATAAAACCCTAGGCATTGGGAACCCCGCCGCTCTGATTTCTTCGCCTTCTCCTCTTACTGCACAGCGGAACCACCAGCCGACGTTTAATTTTGGTAGAGATCAACCTCATAGTCTCTGTTACGATCAATTTTTCCCTCGCGATCAACAACAACAACAACAACAACAACAACAACAACAACAACAGATGATGCTCCGACGAAGCTTCGACGGTGGTACTAACTACGATGGACTTTTGGCCGTCAATGTCACCGTCGGTAACCTTACCCACCCGTTCCAGCAATCTCGCGCCGCTGCTGGAGACGATCGTCGCGGAACTCTCGACCATTCTTAG | 666 | 48.65 | MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTSAKSELSKYKTLGIGNPAALISSPSPLTAQRNHQPTFNFGRDQPHSLCYDQFFPRDQQQQQQQQQQQQQQMMLRRSFDGGTNYDGLLAVNVTVGNLTHPFQQSRAAAGDDRRGTLDHS | 221 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 4724611 | 4725276 | + | Carg19827-RA | Car05g00698 | 149084 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g00698 | 221 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
| Car05g00698 | 221 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 106 | IPR004883 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car04g02589 | Car-Chr4:20334234 | Car05g00698 | Car-Chr5:4724611 | 1.58E-58 | dispersed | |
| Car05g00698 | Car-Chr5:4724611 | Car11g00069 | Car-Chr11:374319 | 1.66E-58 | dispersed | |
| Car15g00151 | Car-Chr15:843451 | Car05g00698 | Car-Chr5:4724611 | 4.19E-49 | dispersed | |
| Car17g00676 | Car-Chr17:6257370 | Car05g00698 | Car-Chr5:4724611 | 8.97E-30 | dispersed | |
| Car05g00698 | Car-Chr5:4724611 | Car02g00432 | Car-Chr2:3418787 | 2.67E-61 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3571 | PF03195 | LOB | 1.90E-43 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g00698 | - | - | csv:101203281 | 378.252 |