Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00711 ATGGGTTTGCGCTCAAACCCTACGGGAAACCTCTCTTTTTCTCCTTCTTTGATCCTCCTCCTGCTTCTTGTTTCTCTGTTTGCCTCCGTTCAGGTGTTTTCTGCGGAAGTGGAGAAAGAGGAGTTGGATGTACCTAAAGATCTCGGTCGACGTAGCAAGATTTCCTGGAACAACGTTGACACAATTGCTGCAAAAAAGGATGTTGTTGACTCAGAAGATCTTAATCTTGACCTGGACTCCGTTGGTCTTGGAGTTTTTGACGCATTTTTTGCTAGTTTGTCCATGATAATTGTCAGTGAGATTGGAGATGAGACGTTTATAATAGCTGCACTTATGGCTATGCGCCACCCGAAGTCCATTGTATTATCTGGTGCGCTCAGTGCCCTGATTGTAATGACAGTACTCTCGACTGGATTAGGTAGGATAGTGCCGAATTTGATATCAAGGAAACATACCAATAATGCTGCTACAGTTCTGTATGCATTTTTTGGATTGCGGTTACTTTACATTGCTTGGAGATCCAAAGCAGACTCAAAATCTTCAACGAAAAAGGAAATGGAAGAAGTAGAGGAGAAACTCGAGGCTGGACAATCCAAGACGACCTTTCGCCGCTTCTTTCTCCGATTTTGCACACCCATATTCTTGGAGTCATTTATTTTAACCTTCCTTGCCGAATGGGGAGATCGAAGTCAGATAGCAACAATTGCTCTAGCAACACACAAGAATGCACTTGGAGTGGCTGTGGGAGCCATCTTGGGGCATTCAGTTTGCACATCAATGGCAGTGATCGGTGGAAGCATGTTGGCATCGAAGATATCACAGGGCACAGTTGCAACAGTTGGAGGCTTGCTCTTCCTTGGCTTCTCCTTTGGTTACTCTGCTTCTACTGCGTTTCTGAAACTTTTCCGTTCTGTTTCTCAAGTTACAATGGCCCAAAAAATCATTCCATTCAACTTCTCTGCGCACCACCTGTTCGAGTCATGTAGCTTCCACTCTTCAAATGATTCTTTGCCCAATACCCTTCATGCCAAGATGGTCAAGAATGGTTCTATTTTCGAATCGAGGAAGTTTATTTTGAGTTCTTATGTGAAATCTGAGAAATTAAACGATGCGCGGAAAGTGTTCGACGAAATGCCCAGCAGAGATGTACTTACATGGACGGTCCTTATATCCGGTTTTGCTAGAGTAAACTGTTCTGAAATGGCATTGCAACTGTTTAGAGAAATGCTGGTTGAAGGTGTTTGTCCAAATCCTTTTACTTTGTCTACTGTTCTTAAACTTTGCTCTAGAGTGGGTGATGTGAAAATGGGTAAGGGAATTCATGGATGGATACTCAGAAGTGGGATTAGCTTAGATGTTGTCTTAGAGAATTCAATGCTTGATTTGTATGCTAAGTTTGATGAATTTGATTATGTCACAAAGTTGTTTGATTCAATGAGAGAAAAGAGCACTGCTACTTACAACATATTGCTTGGTGTGCATGTCCGTAGTGATGTTAACAAATCTCTTGATTTATTCAGAAACTTGCCTTGCAGAGATACTGCAACTTGGAATACAGTAATATGTGGGCTAATGCAAGGTGGGTATCTGAATGAAGCATTGGAGCTACTCTATGAGATGGTGGAGAACGAACCCGAGTTTAACAAAGTTACGTCTTCCATAGCCTTAAGTGTCGTTTCTTCTTTACTGGTTAGCGAGCTCGGTAGACAAGTACATGGTCGAATAGTCAGGTGTGGTTTTCATAATGATGGATTTGTAAAGAGTTCACTGATAAATATGTACATTAAGTGTGGAAATTTGGAAAAAGCATCGGCGATATATAGTCAAATGCCTTCCGGTTTTGCAAAAAGACAAGATTTCGACATTGTATGTAGCGACGCGATGACAGAAATTGTTTCACGGAGCTCAATGGTGTCTGGATATGTTCGAAATGGCAACTATGAAGATGCCTTCAAAACCTTTGTTTCTATGGTTCGTGAACGGGTTCTAATGGATAAATTTACCATTGCAAGCGTTGTTTCCGCTTGTTCTAATGCTGGCGTTTTCGAGCTTGGACGTCAAATCCATGCATATATTCAGAAAACAGGGGAACAGCTTGATGCTCACTTGACTTCCTCCTTGATTGACATGTACGCTAAAGGTGGGAGTCTGGATTGTGCCCGTCAAATTTTCGAGCAAACGACTTACTTAAACGTTGTGATATGGACTTCCATGATCACTGGATGTGCTCTACACGGGCAAGGTAAGGAAGCCATTAGACTGTTTGAAAAGATGAGATATGAGGGAATGATACCAAATGAGGTTACTTTTATAGGAGTTTTAGCAGCTTGCAGTCATGCTGGGCTACTTGAAGATGGCCGTCTATATTTTAACATGATGAAGGATGTTTATGCAATCAAGCCTAAGGTTGAGCATTTCACTTGTATGGTCGATCTTTATGGTCGAGCTGGACGCCTGAACGAAGTCAAAAAGTTCATCTATGAGAATGATATATCACACCTTAATGCAGTTTGGAAGGCATTCCTGTCATCTTGTCAGCTTTACAAGGACATCGAAATGGGGAATTGGGTTTCTGAAAGATTGTTTAGACTCGAACCACTAGACGAAGGGCCTTACGTTTTACTATCGAACATGTGCTCCAGCAATAAAAAATGGGAAGAAGCTTTCAGAACAAGAAGATCTATGCAACACAGAGGGATTAGCAAAACACCTGGTCAATCTTGGATTCATGTGAAAAATCGAGTCCATTCTTTTGTTGCGGGAGATCGATCGCACCCTCAACACGCTCAGATATATGAATATCTAGACAAGCTTATTGGAAGATTGAAGGAAATTGGGTATTTGTTTGATGTAAAATTGGTGATGCAAGATGTAGAAGAAGAACAGGGTGAAGTGCTTCTTGGTTGGCATAGTGAAAAGCTTGCAATTGCTTATGGCTTAATCAGTTTGGGCTCTTCCATTCCAATCCGAATCATGAAGAACCTTAGGATATGTACTGATTGTCATAACTTTATGAAGTTAACATCTCAACTTTTATGCAGGGAGATCATTGTACGAGATATTCATCGTTTCCATCATTTTAACTCCGGTCATTGCTCGTGTGGTGATTATTGGTGA 3117 41.35 MGLRSNPTGNLSFSPSLILLLLLVSLFASVQVFSAEVEKEELDVPKDLGRRSKISWNNVDTIAAKKDVVDSEDLNLDLDSVGLGVFDAFFASLSMIIVSEIGDETFIIAALMAMRHPKSIVLSGALSALIVMTVLSTGLGRIVPNLISRKHTNNAATVLYAFFGLRLLYIAWRSKADSKSSTKKEMEEVEEKLEAGQSKTTFRRFFLRFCTPIFLESFILTFLAEWGDRSQIATIALATHKNALGVAVGAILGHSVCTSMAVIGGSMLASKISQGTVATVGGLLFLGFSFGYSASTAFLKLFRSVSQVTMAQKIIPFNFSAHHLFESCSFHSSNDSLPNTLHAKMVKNGSIFESRKFILSSYVKSEKLNDARKVFDEMPSRDVLTWTVLISGFARVNCSEMALQLFREMLVEGVCPNPFTLSTVLKLCSRVGDVKMGKGIHGWILRSGISLDVVLENSMLDLYAKFDEFDYVTKLFDSMREKSTATYNILLGVHVRSDVNKSLDLFRNLPCRDTATWNTVICGLMQGGYLNEALELLYEMVENEPEFNKVTSSIALSVVSSLLVSELGRQVHGRIVRCGFHNDGFVKSSLINMYIKCGNLEKASAIYSQMPSGFAKRQDFDIVCSDAMTEIVSRSSMVSGYVRNGNYEDAFKTFVSMVRERVLMDKFTIASVVSACSNAGVFELGRQIHAYIQKTGEQLDAHLTSSLIDMYAKGGSLDCARQIFEQTTYLNVVIWTSMITGCALHGQGKEAIRLFEKMRYEGMIPNEVTFIGVLAACSHAGLLEDGRLYFNMMKDVYAIKPKVEHFTCMVDLYGRAGRLNEVKKFIYENDISHLNAVWKAFLSSCQLYKDIEMGNWVSERLFRLEPLDEGPYVLLSNMCSSNKKWEEAFRTRRSMQHRGISKTPGQSWIHVKNRVHSFVAGDRSHPQHAQIYEYLDKLIGRLKEIGYLFDVKLVMQDVEEEQGEVLLGWHSEKLAIAYGLISLGSSIPIRIMKNLRICTDCHNFMKLTSQLLCREIIVRDIHRFHHFNSGHCSCGDYW 1038
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4892405 4899775 + Carg19840-RA Car05g00711 149097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00711 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Car05g00711 1038 Pfam E motif 848 909 IPR046848 -
Car05g00711 1038 Pfam PPR repeat family 731 777 IPR002885 -
Car05g00711 1038 Pfam PPR repeat family 382 428 IPR002885 -
Car05g00711 1038 Pfam E+ motif 915 942 IPR046849 -
Car05g00711 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Car05g00711 1038 Pfam Uncharacterized protein family UPF0016 91 164 IPR001727 -
Car05g00711 1038 Pfam Uncharacterized protein family UPF0016 216 288 IPR001727 -
Car05g00711 1038 Pfam PPR repeat 457 482 IPR002885 -
Car05g00711 1038 Pfam PPR repeat 805 827 IPR002885 -
Car05g00711 1038 Pfam PPR repeat 588 611 IPR002885 -
Car05g00711 1038 Pfam PPR repeat 633 661 IPR002885 -
Car05g00711 1038 Pfam PPR repeat 516 543 IPR002885 -
Car05g00711 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 731 765 IPR002885 -
Car05g00711 1038 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 630 664 IPR002885 -
Car05g00711 1038 Coils Coil 179 199 - -
Car05g00711 1038 Pfam DYW family of nucleic acid deaminases 946 1038 IPR032867 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00711 K23541 TMEM165, GDT1; Ca2+/H+ antiporter, TMEM165/GDT1 family - csv:101208917 1678.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g02001 Car-Chr4:15525202 Car05g00711 Car-Chr5:4892405 1.45E-40 dispersed
Car05g00711 Car-Chr5:4892405 Car03g00712 Car-Chr3:6196617 1.82E-06 dispersed
Car15g00851 Car-Chr15:4950849 Car05g00711 Car-Chr5:4892405 1.56E-38 dispersed
Car15g00852 Car-Chr15:4955305 Car05g00711 Car-Chr5:4892405 3.36E-06 dispersed
Car15g01136 Car-Chr15:8955302 Car05g00711 Car-Chr5:4892405 3.72E-27 dispersed
Car12g00917 Car-Chr12:9190842 Car05g00711 Car-Chr5:4892405 0 transposed
Car12g00916 Car-Chr12:9183245 Car05g00711 Car-Chr5:4892405 8.03E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme05g01150 . . . . . . . . . . . . . . Car05g00711 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009976 1 1 1 1 1 0 2 0 0 1 1 0 2 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 0 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00711 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.502673 0.0 0.435535 0.0 0.0 0.0