Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00715 ATGATATTACTTCTGGTGGGAGTGGGAGGGCTGAGTTGTTTGATTTGTCTTGCAGATGTGGTGGTACTGGATACTGTTTTTCTTACATACGACATAGTTGCTCTGTTTTCAGGTAAGCTGTTTGTAGCTCAAAATGATATGGGGACAAAGCTTATAAGAGCTTGCGTTGAAGAAGATAGCGATGATTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACGATCATGAAAAACAAGACGGTTGTGTCCCTGCTAGTGTGTCGGCAACCGTCTCTGAATCACAGCCAGTTAAAGTTGAAAGTGAGGTAGAAGTTGCCAATGTTGCAAAAGTAACGAGATCCCTTCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGCTTGATACGAAGCATCTAGATCAGAACTTTTCTGTAAGACCTTCTCTTTCGAAGGGAGTCATTCGTGGATGTCCACATTGTAATAATTGCCAAAAGAATCTTGAACAGGTTATTGCGAGATGGCGTCCAGAAGAATCGTGCCGACCAAATCTCGAGGATGCACCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCAAAAGCAGAGCCATATGGGATTTGTCGTATTGTCCCGCCTTCGTCTTGGAAGCCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACGCGTGTCCAAAGGATTGATAAGCTTCAAAACCGAGATTCACTAAGAAAGAACTCTCGGTTTTGCAGTCAGATGAGGAGGAAAAGGAGGAGGGGTAATCGAAAGGGGGTCGATGTGACCATCTTAAATGGAATAAATGGAGATGCTGGGCCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTTCTTTAGCTTTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCGATGATACTTCAAAGGGTTGTAACCCATCGATGCTGCCAGAGAACGAACATTGGAAACCATCTTTGGAAAATATCGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACGGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCGAAGAGTTGCAGTCAAGAGGGCTCGACATCAGATGAAGAGAAGTACGTAAAATCTGGCTGGAACCTCAACAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTATGAGAACAGTAATATATCTGGAGTCCTGGTACCATGGCTGTACATCGGGATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGCGATCCCAAAGTCTGGTATGGTGTTCCGGGAAACGGTGCCAGTAAACTAGAAGACGCTATGAAAAAGCATTTACCTGACCTCTTTCAAGAACAGCCCGATTTACTCCATAAACTGGCAAGTTCCTTCGCTAATCTGATAATGTCGTCGGTTACACAACTTTCTCCGTCTATATTGAAAATCGAGGGTGTGCCCGTATATAGGTGTATTCAGAATCCCGGAGAGTTCGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGCGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTCGACTGGCTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGCGCCGCACGAGAAGCTGTGAGGGCACATTGGGAACTAAATTTTCTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTATGCGGAAAAGATGGCGTCTTAGCAAGAGCGTTCAAGACTCGAGTCGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCAACGGCAATTAAGATGGAGAGCAACTTTGACGCCTCTAACGAGAGAGAGTGCGTTTCATGCCTCTTTGACTTGCATCTGTCGGCCGTCGGGTGTCATTGTTCACCGGATAAATATGTATGCTTGAATCACGCAAAGCAGTTGTGTTCTTGTGCTTGGGAGAAGAGAATTTTTCTCTTCCGCTACGACATCAGCGAATTGAACGTTCTTCTTGAAGCATTGGAGGGTAAGTTAAGTGCAGTATACCGGTGGGCGAGGCAGAATCTCGGTCTGGCACTCAGTACGTCAAGGGAGTTGAGTTCTCAATCATCGACCATGTCCCTTGGGAAACCTCAATGGAAAGAAATCTTGAGGCAATCTTCATTATTGCCCGCTCTAACGGCTATTGACAGCGCTTCTCATCATGCCAAAACGTTATCTACCGTTAACGGTTCGGGAAAGGTAGTTGAGCAGCAAAATTATAAATCTGAGGTGAAAAATGAAAACCATGACCTTGTGGCAACGAATTCGAGGCATACCGATTCGCAGTCCTGTAAGGAGGATACAAATGCTCTGAATTTGGATAAAATGTGCACTGAAAATGTGATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGCGTAGCTGAAAGTTTATCAGTGAAGCCGCTCGAAACCTCAAATCGTTTCTCTGATATTGATTCTAAGGCTAGCCTGTGCAACTACAATGATAATACGAGTCTGCACAGCCCGGTGACTGATGCAACGACCATCGAAGAAAAGGAAGTCAACTTGTTGATTGAAAGAAAATCGAATAATTGCCAATCGAGCGTTGTTCCTTTAAATAGAAACGCAGCTAATGCTATTCAGAACAACAATTTTTCAGAAGCTGGGTTAGGTCGTAGTAATAAAGTATTTTCAGCTTCAACGGACATCGATTCTCGAAAATCACAGACTTGTGGCTCGGGAAAACCGAATGAGGGTAGGCACGGAAACGTGGGAACAAGTGCTACCTCTTGTGTGATGGACCCTAGTAGAACCACTGCAAGTTTGTCCTGCAATCAAGCTAATATGGACAGATTCTTGAGGCAAAAGGGTCCTAGAATGGCGAAGCTAGTTCGGAGAATTAACTGCAACGTAGAGCCTTTAGAATATGGAACCGTGCTCTCAGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCGAAAGGATTTAAGAGCAGGGTCAAGTATATAAGCGTTTTAGATCCATCAACTTTGTGTTACTATGTTTCTGAAATTCTCGACGCCGGACGGGACGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCATCCGAGGTATTCGTTCACGTTTCTGCTGCTAGATGTTGGGAGCTGGTTCGAGATCGAGTTAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAATGAATCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGCTTAGAAATGTTCGGATTCACTTCACCAGCAATCGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTTGCGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCACGTACATAGTCCACAACTGTCTCAATCGACAGAAATGAAAACGACCGAAAGGAACCATAGGGGGGTCGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACATTGATGAACTAAACTTACTCTATACCGTTTTAAATGATAGTAGTAGGGCAACGGTCGATCAAGGCGACGGTTACTCGGCCTTCCTAACGAACGAGTCTACGAGAAGTCATCAAGGCATGATTTCATTGTTCGGGTTTTTTTTTTTTTTTTTTTGA 3813 43.98 MILLLVGVGGLSCLICLADVVVLDTVFLTYDIVALFSGKLFVAQNDMGTKLIRACVEEDSDDFPSVPPGFESYISFSLGKVHDHEKQDGCVPASVSATVSESQPVKVESEVEVANVAKVTRSLRRKPCVNYRQYDYCSDDELDTKHLDQNFSVRPSLSKGVIRGCPHCNNCQKNLEQVIARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSLRKNSRFCSQMRRKRRRGNRKGVDVTILNGINGDAGPYEAERFGFDPGPDFSLALFQKYADDFKSQYFSKPLDDTSKGCNPSMLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCSQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYENSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGASKLEDAMKKHLPDLFQEQPDLLHKLASSFANLIMSSVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNFLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECARRNLPCSSSTAIKMESNFDASNERECVSCLFDLHLSAVGCHCSPDKYVCLNHAKQLCSCAWEKRIFLFRYDISELNVLLEALEGKLSAVYRWARQNLGLALSTSRELSSQSSTMSLGKPQWKEILRQSSLLPALTAIDSASHHAKTLSTVNGSGKVVEQQNYKSEVKNENHDLVATNSRHTDSQSCKEDTNALNLDKMCTENVILLSDDEGDEHKKTISNGVAESLSVKPLETSNRFSDIDSKASLCNYNDNTSLHSPVTDATTIEEKEVNLLIERKSNNCQSSVVPLNRNAANAIQNNNFSEAGLGRSNKVFSASTDIDSRKSQTCGSGKPNEGRHGNVGTSATSCVMDPSRTTASLSCNQANMDRFLRQKGPRMAKLVRRINCNVEPLEYGTVLSGKSWSNSRAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRMNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCCEYWDSRPYSRPHVHSPQLSQSTEMKTTERNHRGVDIVLRGLLKKANIDELNLLYTVLNDSSRATVDQGDGYSAFLTNESTRSHQGMISLFGFFFFFF 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4922003 4928920 - Carg19844-RA Car05g00715 149101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00715 1270 Pfam F/Y rich C-terminus 1091 1175 IPR003889 GO:0005634
Car05g00715 1270 ProSiteProfiles JmjC domain profile. 409 586 IPR003347 -
Car05g00715 1270 Pfam JmjC domain, hydroxylase 442 569 IPR003347 -
Car05g00715 1270 ProSiteProfiles FYR domain FYRN motif profile. 1029 1087 IPR003888 GO:0005634
Car05g00715 1270 ProSiteProfiles JmjN domain profile. 195 236 IPR003349 -
Car05g00715 1270 Pfam jmjN domain 196 229 IPR003349 -
Car05g00715 1270 ProSiteProfiles FYR domain FYRC motif profile. 1089 1179 IPR003889 GO:0005634
Car05g00715 1270 MobiDBLite consensus disorder prediction 971 996 - -
Car05g00715 1270 Pfam C5HC2 zinc finger 676 726 IPR004198 -
Car05g00715 1270 Pfam F/Y-rich N-terminus 1043 1084 IPR003888 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00715 Car-Chr5:4922003 Car13g00351 Car-Chr13:6133873 0 dispersed
Car20g00799 Car-Chr20:4835301 Car05g00715 Car-Chr5:4922003 1.78E-54 dispersed
Car08g00252 Car-Chr8:1596532 Car05g00715 Car-Chr5:4922003 2.08E-67 transposed
Car15g01104 Car-Chr15:8682827 Car05g00715 Car-Chr5:4922003 5.82E-16 transposed
Car12g00919 Car-Chr12:9197532 Car05g00715 Car-Chr5:4922003 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3572 PF02373 JmjC 1.60E-39 CL0029 Car TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00715 - - csv:101208186 2032.3