Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00715 ATGATATTACTTCTGGTGGGAGTGGGAGGGCTGAGTTGTTTGATTTGTCTTGCAGATGTGGTGGTACTGGATACTGTTTTTCTTACATACGACATAGTTGCTCTGTTTTCAGGTAAGCTGTTTGTAGCTCAAAATGATATGGGGACAAAGCTTATAAGAGCTTGCGTTGAAGAAGATAGCGATGATTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACGATCATGAAAAACAAGACGGTTGTGTCCCTGCTAGTGTGTCGGCAACCGTCTCTGAATCACAGCCAGTTAAAGTTGAAAGTGAGGTAGAAGTTGCCAATGTTGCAAAAGTAACGAGATCCCTTCGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGCTTGATACGAAGCATCTAGATCAGAACTTTTCTGTAAGACCTTCTCTTTCGAAGGGAGTCATTCGTGGATGTCCACATTGTAATAATTGCCAAAAGAATCTTGAACAGGTTATTGCGAGATGGCGTCCAGAAGAATCGTGCCGACCAAATCTCGAGGATGCACCTGTGTTTTACCCAACTGAAGAGGAATTTGGAGATACTTTGACATATATAGCGAGCATTCGAGCAAAAGCAGAGCCATATGGGATTTGTCGTATTGTCCCGCCTTCGTCTTGGAAGCCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACGCGTGTCCAAAGGATTGATAAGCTTCAAAACCGAGATTCACTAAGAAAGAACTCTCGGTTTTGCAGTCAGATGAGGAGGAAAAGGAGGAGGGGTAATCGAAAGGGGGTCGATGTGACCATCTTAAATGGAATAAATGGAGATGCTGGGCCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGTCCAGATTTTTCTTTAGCTTTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCGATGATACTTCAAAGGGTTGTAACCCATCGATGCTGCCAGAGAACGAACATTGGAAACCATCTTTGGAAAATATCGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACGGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGTTTTCCGAAGAGTTGCAGTCAAGAGGGCTCGACATCAGATGAAGAGAAGTACGTAAAATCTGGCTGGAACCTCAACAACTTTCCGAAGCTTCCTGGATCAGTTCTTAGCTATGAGAACAGTAATATATCTGGAGTCCTGGTACCATGGCTGTACATCGGGATGTGCTTTTCGTCATTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGCGATCCCAAAGTCTGGTATGGTGTTCCGGGAAACGGTGCCAGTAAACTAGAAGACGCTATGAAAAAGCATTTACCTGACCTCTTTCAAGAACAGCCCGATTTACTCCATAAACTGGCAAGTTCCTTCGCTAATCTGATAATGTCGTCGGTTACACAACTTTCTCCGTCTATATTGAAAATCGAGGGTGTGCCCGTATATAGGTGTATTCAGAATCCCGGAGAGTTCGTTTTGACCTTCCCTCGTGCATACCATTCGGGATTCAACAGCGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTCGACTGGCTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAGGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGCGCCGCACGAGAAGCTGTGAGGGCACATTGGGAACTAAATTTTCTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAATGTATGCGGAAAAGATGGCGTCTTAGCAAGAGCGTTCAAGACTCGAGTCGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCAACGGCAATTAAGATGGAGAGCAACTTTGACGCCTCTAACGAGAGAGAGTGCGTTTCATGCCTCTTTGACTTGCATCTGTCGGCCGTCGGGTGTCATTGTTCACCGGATAAATATGTATGCTTGAATCACGCAAAGCAGTTGTGTTCTTGTGCTTGGGAGAAGAGAATTTTTCTCTTCCGCTACGACATCAGCGAATTGAACGTTCTTCTTGAAGCATTGGAGGGTAAGTTAAGTGCAGTATACCGGTGGGCGAGGCAGAATCTCGGTCTGGCACTCAGTACGTCAAGGGAGTTGAGTTCTCAATCATCGACCATGTCCCTTGGGAAACCTCAATGGAAAGAAATCTTGAGGCAATCTTCATTATTGCCCGCTCTAACGGCTATTGACAGCGCTTCTCATCATGCCAAAACGTTATCTACCGTTAACGGTTCGGGAAAGGTAGTTGAGCAGCAAAATTATAAATCTGAGGTGAAAAATGAAAACCATGACCTTGTGGCAACGAATTCGAGGCATACCGATTCGCAGTCCTGTAAGGAGGATACAAATGCTCTGAATTTGGATAAAATGTGCACTGAAAATGTGATACTACTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGCGTAGCTGAAAGTTTATCAGTGAAGCCGCTCGAAACCTCAAATCGTTTCTCTGATATTGATTCTAAGGCTAGCCTGTGCAACTACAATGATAATACGAGTCTGCACAGCCCGGTGACTGATGCAACGACCATCGAAGAAAAGGAAGTCAACTTGTTGATTGAAAGAAAATCGAATAATTGCCAATCGAGCGTTGTTCCTTTAAATAGAAACGCAGCTAATGCTATTCAGAACAACAATTTTTCAGAAGCTGGGTTAGGTCGTAGTAATAAAGTATTTTCAGCTTCAACGGACATCGATTCTCGAAAATCACAGACTTGTGGCTCGGGAAAACCGAATGAGGGTAGGCACGGAAACGTGGGAACAAGTGCTACCTCTTGTGTGATGGACCCTAGTAGAACCACTGCAAGTTTGTCCTGCAATCAAGCTAATATGGACAGATTCTTGAGGCAAAAGGGTCCTAGAATGGCGAAGCTAGTTCGGAGAATTAACTGCAACGTAGAGCCTTTAGAATATGGAACCGTGCTCTCAGGAAAGTCTTGGTCGAACAGTCGGGCCATTTTTCCGAAAGGATTTAAGAGCAGGGTCAAGTATATAAGCGTTTTAGATCCATCAACTTTGTGTTACTATGTTTCTGAAATTCTCGACGCCGGACGGGACGGACCTCTTTTCATGGTTGTTTTGGAGCATTGTCCATCCGAGGTATTCGTTCACGTTTCTGCTGCTAGATGTTGGGAGCTGGTTCGAGATCGAGTTAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAATGAATCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGCTTAGAAATGTTCGGATTCACTTCACCAGCAATCGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTTGCGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCACGTACATAGTCCACAACTGTCTCAATCGACAGAAATGAAAACGACCGAAAGGAACCATAGGGGGGTCGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACATTGATGAACTAAACTTACTCTATACCGTTTTAAATGATAGTAGTAGGGCAACGGTCGATCAAGGCGACGGTTACTCGGCCTTCCTAACGAACGAGTCTACGAGAAGTCATCAAGGCATGATTTCATTGTTCGGGTTTTTTTTTTTTTTTTTTTGA 3813 43.98 MILLLVGVGGLSCLICLADVVVLDTVFLTYDIVALFSGKLFVAQNDMGTKLIRACVEEDSDDFPSVPPGFESYISFSLGKVHDHEKQDGCVPASVSATVSESQPVKVESEVEVANVAKVTRSLRRKPCVNYRQYDYCSDDELDTKHLDQNFSVRPSLSKGVIRGCPHCNNCQKNLEQVIARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSLRKNSRFCSQMRRKRRRGNRKGVDVTILNGINGDAGPYEAERFGFDPGPDFSLALFQKYADDFKSQYFSKPLDDTSKGCNPSMLPENEHWKPSLENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKSCSQEGSTSDEEKYVKSGWNLNNFPKLPGSVLSYENSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGASKLEDAMKKHLPDLFQEQPDLLHKLASSFANLIMSSVTQLSPSILKIEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNFLKKNTLDNLRWNNVCGKDGVLARAFKTRVEMECARRNLPCSSSTAIKMESNFDASNERECVSCLFDLHLSAVGCHCSPDKYVCLNHAKQLCSCAWEKRIFLFRYDISELNVLLEALEGKLSAVYRWARQNLGLALSTSRELSSQSSTMSLGKPQWKEILRQSSLLPALTAIDSASHHAKTLSTVNGSGKVVEQQNYKSEVKNENHDLVATNSRHTDSQSCKEDTNALNLDKMCTENVILLSDDEGDEHKKTISNGVAESLSVKPLETSNRFSDIDSKASLCNYNDNTSLHSPVTDATTIEEKEVNLLIERKSNNCQSSVVPLNRNAANAIQNNNFSEAGLGRSNKVFSASTDIDSRKSQTCGSGKPNEGRHGNVGTSATSCVMDPSRTTASLSCNQANMDRFLRQKGPRMAKLVRRINCNVEPLEYGTVLSGKSWSNSRAIFPKGFKSRVKYISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSAARCWELVRDRVNQEIAKQHKLGRMNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCCEYWDSRPYSRPHVHSPQLSQSTEMKTTERNHRGVDIVLRGLLKKANIDELNLLYTVLNDSSRATVDQGDGYSAFLTNESTRSHQGMISLFGFFFFFF 1270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4922003 4928920 - Carg19844-RA Car05g00715 149101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00715 1270 Pfam F/Y rich C-terminus 1091 1175 IPR003889 GO:0005634
Car05g00715 1270 ProSiteProfiles JmjC domain profile. 409 586 IPR003347 -
Car05g00715 1270 Pfam JmjC domain, hydroxylase 442 569 IPR003347 -
Car05g00715 1270 ProSiteProfiles FYR domain FYRN motif profile. 1029 1087 IPR003888 GO:0005634
Car05g00715 1270 ProSiteProfiles JmjN domain profile. 195 236 IPR003349 -
Car05g00715 1270 Pfam jmjN domain 196 229 IPR003349 -
Car05g00715 1270 ProSiteProfiles FYR domain FYRC motif profile. 1089 1179 IPR003889 GO:0005634
Car05g00715 1270 MobiDBLite consensus disorder prediction 971 996 - -
Car05g00715 1270 Pfam C5HC2 zinc finger 676 726 IPR004198 -
Car05g00715 1270 Pfam F/Y-rich N-terminus 1043 1084 IPR003888 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00715 - - - csv:101208186 2032.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00715 Car-Chr5:4922003 Car13g00351 Car-Chr13:6133873 0 dispersed
Car20g00799 Car-Chr20:4835301 Car05g00715 Car-Chr5:4922003 1.78E-54 dispersed
Car08g00252 Car-Chr8:1596532 Car05g00715 Car-Chr5:4922003 2.08E-67 transposed
Car15g01104 Car-Chr15:8682827 Car05g00715 Car-Chr5:4922003 5.82E-16 transposed
Car12g00919 Car-Chr12:9197532 Car05g00715 Car-Chr5:4922003 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00715 . 47 1234 JUMONJI Transcription Factor Family AT1G08620 53.7 0.0e+00 1213.0
Car18g00498 . 32 581 JUMONJI Transcription Factor Family AT1G08620 59.4 9.4e-189 658.3
Car18g00498 . 21 643 JUMONJI Transcription Factor Family AT1G30810 57.3 9.2e-204 707.6
Car18g00498 . 27 586 JUMONJI Transcription Factor Family AT2G34880 55.3 3.2e-177 619.4
Car18g00498 . 58 602 JUMONJI Transcription Factor Family AT4G20400 59.8 1.5e-194 677.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3572 PF02373 JmjC 1.60E-39 CL0029 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00715 Car_Chr05 FPKM 16.707605 19.240421 24.722631 26.819706 33.001381 29.594547 32.110188 28.472069 26.653017 33.666737