Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00741 ATGGCTTCAATCAACTGGTTGGGTTTCTCCCTCTCCCCCCAACATCACCAACTCCCCCACCACCCCTCCGACCACTCTCACGCCGTCTCCGCCGCTGCCTTCACCACCGACCAAATCTCCGCCTCTGACGTCCCCGCCGTCTGCTTTGACAACCTTCCTTCCTCCTATGGCGTCTATGACTCTCAAGATTGGAATAGTGTGAAGGGTTTAGGGCAGACTCAAAGTTCGGATTTTTCTGGTTTAATCGACACCCATCACCAACCAAAGCTTGAAAATTTCCTCGGCCACCACTCTTTCACCGACCACGACCACCCCGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATCTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGCCAAACGGCGGAAGCGGTGACGGCGGTGGAAGACCCAACCCCAGTAACGGTAACTACACTAGCTCTATTGGGTTGTCTATGATCAAGACGTGGCTGAGAAACCAACCGGCGCCGCCCCAAGCGGTGGCTAAAAACGGCGGAGATCACGACGGAGCAGTACCAAAACCTAATATCACAAACCCACATACTTTATCACTGTCGATGAACACCGGACCACCACCACCACCACCACCGTCGCAGTCCTCCGACTCGGAAGCTCTACCACTTCTCGTAACAAACGGCGGCGAAAGCTCCTCCGATAAGAAACAACCCAAATCATCCGCTACCGAGGTAGACACTGAAAACAGCGCCATTGAAGCTGTCCCAAGAAAATCCATGGACACATTCGGACAAAGAACTTCCATCTACCGCGGCATAGATGGACAGGAAGATATGAAGCTCATCTATGGGACAATAGTTGCAGAAGAGAAGGACAAACCAGAAAAGGAAGACAAGTTTTTAATTTGGTGGCGTGGGGTTCTTATCAACTCATGTGGGGTTCCATTTCCACTACAAAATGCAGTCTATTTAGGAGGTTATGACAAAGAACAAAAGGCTGCTAGAGCCTACGATTTAGCAGCACTTAAATACTGGGGTACCACTACCACCACCAACTTTCCAATTAGTGATTACGAAAAAGAGTTGGAAGACATGAAGCATATGACCCGACAAGAGTTTGTAGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGTGGAGCTTCCATTTACCGTGGAGTAACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCTGGAAACAAAGACCTTTACTTGGGAACTTTCAGTACGCAAGAGGAAGCAGCCGAGGCATACGACATAGCAGCCATAAAGTTCCGAGGACTAAATGCCGTGACCAACTTCGACATGACTCGATACGATGTCAAAGCCATTCTTGAAAGCAACACATTGCCTATTGGTGGTGCTGCCAAGCGTTTAAAGGATATTGACCATTCTGACATTCCTCTGCATCTCCAATCAACTGATGAAAACATATCATCACATTTATCTAATGGAATAATTACTACCGGGGGCGGTGGATGGCCAACTCTCGCCTTCCACCACCACCACCCCTACGCCTCTCACTACCCTTATGGTGCTCTACAGCAACGGCTGTGGTGCAAGCAAGAGAACGATGTCACTGCCGGGAACTTCTTGGACTCGATGGACCAGAGCTCCGGGTCGAGCTCGGTGGTTTATAATAGAGATGGGTACGGTGGGAACTTCGTGATTCCGATGGGAGCGGAAGGGGGTGGATTGGGAGACATTGGAGAAGTGAATATGTTCGGTGGTGGTTGTAACGTGGATGACCCATTCCATGCAACAAGAACGAGCAATTTGTATGATTATAATAATTCCTCCCATCAGCTGCAACAACCGCCGCCGGAGCTGCAAGGCTCCTCCGGCAACAACTGGCTTCCGCCAGCCAGGTCGGTTTGTCACGGCGGAACTCCGCCGCCTTTCACCATTTGGAATGACACTTAA 1947 50.23 MASINWLGFSLSPQHHQLPHHPSDHSHAVSAAAFTTDQISASDVPAVCFDNLPSSYGVYDSQDWNSVKGLGQTQSSDFSGLIDTHHQPKLENFLGHHSFTDHDHPAAAVYTNASANYIFQNCSLELPSEPNGGSGDGGGRPNPSNGNYTSSIGLSMIKTWLRNQPAPPQAVAKNGGDHDGAVPKPNITNPHTLSLSMNTGPPPPPPPSQSSDSEALPLLVTNGGESSSDKKQPKSSATEVDTENSAIEAVPRKSMDTFGQRTSIYRGIDGQEDMKLIYGTIVAEEKDKPEKEDKFLIWWRGVLINSCGVPFPLQNAVYLGGYDKEQKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLHLQSTDENISSHLSNGIITTGGGGWPTLAFHHHHPYASHYPYGALQQRLWCKQENDVTAGNFLDSMDQSSGSSSVVYNRDGYGGNFVIPMGAEGGGLGDIGEVNMFGGGCNVDDPFHATRTSNLYDYNNSSHQLQQPPPELQGSSGNNWLPPARSVCHGGTPPPFTIWNDT 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5415780 5418803 - Carg26887-RA Car05g00741 149127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00741 648 MobiDBLite consensus disorder prediction 600 625 - -
Car05g00741 648 MobiDBLite consensus disorder prediction 212 231 - -
Car05g00741 648 ProSiteProfiles AP2/ERF domain profile. 385 443 IPR001471 GO:0003700|GO:0006355
Car05g00741 648 Pfam AP2 domain 385 435 IPR001471 GO:0003700|GO:0006355
Car05g00741 648 MobiDBLite consensus disorder prediction 128 151 - -
Car05g00741 648 MobiDBLite consensus disorder prediction 197 211 - -
Car05g00741 648 MobiDBLite consensus disorder prediction 166 248 - -
Car05g00741 648 ProSiteProfiles AP2/ERF domain profile. 264 349 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01022 Car-Chr2:7182309 Car05g00741 Car-Chr5:5415780 2.25E-31 dispersed
Car05g00741 Car-Chr5:5415780 Car20g00058 Car-Chr20:321250 1.97E-98 dispersed
Car09g00261 Car-Chr9:1428446 Car05g00741 Car-Chr5:5415780 2.65E-16 dispersed
Car12g00953 Car-Chr12:9641161 Car05g00741 Car-Chr5:5415780 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3574 PF00847 AP2 4.70E-10 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00741 K09285 - csv:101219473 869.381