Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00763 ATGTCAGCATCTCATCACGCGATTGGGTTTTTCGCGTTCTGGCAAGTATCTTTTTCCTTCTGGATTCTCGATCCACTTCCTTTTGATCGTGTTCTTGGCCTTCGATTTGTGATTCTTTTGGTTTCTGGATTTTGTTTTCTGTTGAATATGCCATCGGCTCAAGATCCGTTCTATGTTGTAAAAGACGAGATTCAAGAATCTATCGATAAACTGCAATCAAGTTTTCACCAATGGGAAAGGATATCTTCCGATCTAGGAGAGAGAGTACAACTCACAAAAGAGTTGCTCGCTGCCTGTGAGAGCATTGAATGGCAGGTGGATGAACTGGACAAAGCTATTGCTGTGGCAGCTAGAGATCCTTCTTGGTATGGCATTGATGATGCAGAACTTGAAAGACGAAGGAGATGGACGAGTACAGCTAGGACACAGGTTGGAAATGTCAAGAAAGTAGTGGGAGCTGGAAAGGAGCAAGCTGGAACTGCTAGTTCTAATGGGATGCGTCGAGAATTGATGAGATTACCAAATCCGCACGAAACAGACAGATCAAACTTATATACAGCCCACCAAGCAAATGATGACTTCATCACATCCGAATCTGATCGACAGCTGCTTCTCATAAAGCGGCAGGACGAGGAGTTGGATGAGTTGAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACAATACATGAAGAGCTCAAATTGCAGGATAAAATTATTGACGATCTGGGAAATGAAATGGACAGTACATCAAATCGCCTCGATTTTGTTCAGAAAAAAGTAGCTGTGGTCATGAAGAAGGCCAGCGCCAAGGGCCAGTTAATGATGATCTTGTTCTTGTTTTTGAAGCAAAATGAGGCCCTTGCCGTTCACGATGCATCAGAAATGGATATGATAAACCAGAAGATG 912 43.53 MSASHHAIGFFAFWQVSFSFWILDPLPFDRVLGLRFVILLVSGFCFLLNMPSAQDPFYVVKDEIQESIDKLQSSFHQWERISSDLGERVQLTKELLAACESIEWQVDELDKAIAVAARDPSWYGIDDAELERRRRWTSTARTQVGNVKKVVGAGKEQAGTASSNGMRRELMRLPNPHETDRSNLYTAHQANDDFITSESDRQLLLIKRQDEELDELSASVERIGGVGLTIHEELKLQDKIIDDLGNEMDSTSNRLDFVQKKVAVVMKKASAKGQLMMILFLFLKQNEALAVHDASEMDMINQKM 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5910496 5920957 - Carg25825-RA Car05g00763 149149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00763 304 SUPERFAMILY t-snare proteins 54 149 IPR010989 GO:0016020|GO:0016192
Car05g00763 304 Gene3D - 210 274 - -
Car05g00763 304 SUPERFAMILY SNARE fusion complex 202 265 - -
Car05g00763 304 PANTHER SYNTAXIN 50 284 IPR045242 -
Car05g00763 304 CDD SNARE_Qc 206 263 - -
Car05g00763 304 Coils Coil 241 261 - -
Car05g00763 304 PANTHER SYNTAXIN PROTEIN 50 284 - -
Car05g00763 304 Gene3D - 51 153 - -
Car05g00763 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Car05g00763 304 Pfam SNARE domain 240 283 IPR000727 -
Car05g00763 304 SMART tSNARE_6 198 265 IPR000727 -
Car05g00763 304 Pfam Syntaxin 6, N-terminal 55 148 IPR015260 GO:0016020|GO:0048193
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00763 Car-Chr5:5910496 Car17g00040 Car-Chr17:193371 2.08E-135 dispersed
Car05g00763 Car-Chr5:5910496 Car01g00980 Car-Chr1:9324160 2.64E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00763 K08500 - csv:101212527 409.838