Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00808 ATGTCGATCTCTTCTTCCGATGACTGCTTTATTGACTCTCATTTACTCTGTGACGAGGACTCCTCCGATATTTTGTCCGGAGAGTCGCCAGAGTACTCCTCGGACCTTGAATCGCCTGCCAGTAGTGAGGATTCTATTGCTAGTTTCATAGAGGATGAGAGGCACTTCGTTCCTGGGATTGATTACTTGTCGCGCTTTCACTCTCAATCGCTCGATTCCTCCGCAAGAGCTGACTCTGTTGCATGGATTCTCAAGGTTCAAGCATATTACGGTTTTCAACCACTCACTGCATACCTTTCCGTCAATTACTTGGATCGATTCCTTTATTCTCGCCGCTTACCGGAAACAAATGGGTGGCCATTGCAGCTTCTATCAGTGGCTTGTTTGTCACTTGCAGCTAAAATGGAGGAACCACTTGTTCCTTCGTTCCTGGATCTCCAGATCGAAGGAGCAAAATATATATTTGAACCTAGAACAATACGTAGGATGGAGCTTCTTGTGCTTACAACATTGGATTGGCGGCTCCGATCCGTAACCCCCTTCAGCTTCATCGGATTCTTCGCCTACAAAGTCGATCCCACCGGAACATTTTCCAGTTTTCTCATCTCACGCTCCACAGAAATCATTCTCTCCAATATTCGAGGTGACGCAAGCTTTCTTGAGTACTGGCCTTCCTGCATTGCTGCCGCAGCCTTACTTTGTGCGGCAAATGAAATACCCAATTTGACCCTTCTCAATCCTGAACATGCAGAGTCTTGGTGCAATGGACTCAGCAAAGATAAAATTGTCGGGTGTTATCGACTAATGCAGCCGTTAACATCGGAGAGTGGTCGTAGAAAGCCCCCGAAAGTGATACCGCAACTCCGAGTGAGAATCCGAGCTGGGTTGAGGTACAGCAACTCGTCGTCATCGTCGTCATCAACAAGGTTAGGTTATAAAAGGAGGAAGTTGAATAATTGCTTGTGGGTAGACGAAGATGACAAAGAAAATTCCAAGTTTAGAGCAGAGGAATAA 1014 46.25 MSISSSDDCFIDSHLLCDEDSSDILSGESPEYSSDLESPASSEDSIASFIEDERHFVPGIDYLSRFHSQSLDSSARADSVAWILKVQAYYGFQPLTAYLSVNYLDRFLYSRRLPETNGWPLQLLSVACLSLAAKMEEPLVPSFLDLQIEGAKYIFEPRTIRRMELLVLTTLDWRLRSVTPFSFIGFFAYKVDPTGTFSSFLISRSTEIILSNIRGDASFLEYWPSCIAAAALLCAANEIPNLTLLNPEHAESWCNGLSKDKIVGCYRLMQPLTSESGRRKPPKVIPQLRVRIRAGLRYSNSSSSSSSTRLGYKRRKLNNCLWVDEDDKENSKFRAEE 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7675842 7677727 - Carg26436-RA Car05g00808 149194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00808 337 Pfam Cyclin, N-terminal domain 46 175 IPR006671 -
Car05g00808 337 Pfam Cyclin, C-terminal domain 178 280 IPR004367 -
Car05g00808 337 MobiDBLite consensus disorder prediction 26 40 - -
Car05g00808 337 MobiDBLite consensus disorder prediction 21 40 - -
Car05g00808 337 ProSitePatterns Cyclins signature. 76 107 IPR006671 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car01g00899 Car05g00808 CCT
Car05g00808 Car12g00381 CCT
Car05g00808 Car12g00381 ECH
Car01g00899 Car05g00808 ECH
Car05g00808 Car09g00086 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00363 Car-Chr3:4501281 Car05g00808 Car-Chr5:7675842 6.28E-10 dispersed
Car04g00414 Car-Chr4:2344753 Car05g00808 Car-Chr5:7675842 4.22E-58 dispersed
Car04g01638 Car-Chr4:9440369 Car05g00808 Car-Chr5:7675842 3.53E-147 dispersed
Car05g00808 Car-Chr5:7675842 Car12g00689 Car-Chr12:4772655 0 dispersed
Car05g00808 Car-Chr5:7675842 Car04g00277 Car-Chr4:1565989 7.39E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00808 K18810 - csv:101210686 601.668