Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00820 ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTTACAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGCCTAGTTGCCCTTGGCCCACGCGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGGAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCACGACGAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG 819 47.86 MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGLQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSTTRTEDNRRANDANPRYGGDFEWSR 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8087535 8091303 - Carg27847-RA Car05g00820 149206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00820 272 MobiDBLite consensus disorder prediction 249 272 - -
Car05g00820 272 Pfam Whirly transcription factor 95 229 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00820 - - - csv:101203474 452.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00805 Car-Chr1:5303055 Car05g00820 Car-Chr5:8087535 2.04E-49 transposed
Car12g00685 Car-Chr12:4735071 Car05g00820 Car-Chr5:8087535 7.11E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car05g00820 . 69 272 Whirly Transcription Factor Family AT1G14410 71.9 6.6e-87 317.8
Car12g00685 . 69 275 Whirly Transcription Factor Family AT1G14410 70.0 6.6e-87 317.8
Car01g00805 . 41 213 Whirly Transcription Factor Family AT1G71260 60.7 1.7e-57 219.9
Car12g00685 . 80 244 Whirly Transcription Factor Family AT1G71260 50.6 3.7e-44 175.6
Car05g00820 . 64 272 Whirly Transcription Factor Family AT2G02740 74.3 1.4e-87 320.1
Car12g00685 . 47 275 Whirly Transcription Factor Family AT2G02740 66.5 4.3e-86 315.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3584 PF08536 Whirly 1.10E-59 CL0609 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00820 Car_Chr05 FPKM 0.0 0.266693 1.216281 0.897821 4.286458 4.245322 6.368517 1.949097 2.411507 2.706411