Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g00820 | ATGCTGCGTCTTCAATGCCTTTCTTCTTCATTGCTTCCGCCATTAATCCCCGAACTCTCGCCGGAAACCTCTTCGAACCGCCGACTATGTCGCCTCAACTCCTTTCGCCCACTCCTCACTCTCTCTACTACACCAAAATCTTCTCCAAAGTGCCAATACTCCTGGAACACGCAGCAGCATCAGGCGGCCTTCGAATCGGGCTTACAGACGGATTCATTTTCCTCACAAACTCGCGCCGGAGCTGCTGCAGCATTGCCACCAAGGTTTTTTGTTGGTCATTCAATATACAAAGGGAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTCACACCTCTAGATTCAGGGGCGTTCAAAATATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCTTTATCAGTGACAGAATTGGGAAGCCTAGTTGCCCTTGGCCCACGCGAATCTTGTGAACTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAGGTCAGGAAGATACTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCGTTTTTTCAATCTCAGCGTTCAGAACAAGCTAACCAACGTGGATGAGAGCATTTATATTCCCATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTTAAGTTTATCTTGCCGCACCTTATGGGTTGGCATGCAATTGCAAACAGCACGACGAGAACAGAAGATAACAGGCGAGCAAATGACGCGAATCCCAGATATGGCGGTGACTTTGAATGGAGCAGATAG | 819 | 47.86 | MLRLQCLSSSLLPPLIPELSPETSSNRRLCRLNSFRPLLTLSTTPKSSPKCQYSWNTQQHQAAFESGLQTDSFSSQTRAGAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCELFHDPYKGKSDEGKVRKILKVEPLPDGSGRFFNLSVQNKLTNVDESIYIPITKAEYTVLVEAFKFILPHLMGWHAIANSTTRTEDNRRANDANPRYGGDFEWSR | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8087535 | 8091303 | - | Carg27847-RA | Car05g00820 | 149206 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g00820 | 272 | MobiDBLite | consensus disorder prediction | 249 | 272 | - | - | |
Car05g00820 | 272 | Pfam | Whirly transcription factor | 95 | 229 | IPR013742 | GO:0003697|GO:0006355|GO:0006952 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car01g00805 | Car-Chr1:5303055 | Car05g00820 | Car-Chr5:8087535 | 2.04E-49 | transposed | |
Car12g00685 | Car-Chr12:4735071 | Car05g00820 | Car-Chr5:8087535 | 7.11E-160 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3584 | PF08536 | Whirly | 1.10E-59 | CL0609 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g00820 | - | - | csv:101203474 | 452.981 |