Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00827 ATGGCCGGGTTTAGAATCTTGTTCGTCTTCTCGTTGTTGTACTTTGTCGCGGCATATACCGATGCCAATGTCGATGTCGATGACCATGATGAATATTGGCTCACTCGTGCTAATGAGGCTAAGAAAGTAGCCCAAGATGCCTACAATCCTAAGCCAGAAAGCGTCACTGAGCATTTGAATGTCGCCGTCCGTCTGGCGATGGTGGGTGACAATAGTACAAGAAGGAGTCTCAATAAATATAAAGGACCATGTTTGAAGACAAACCCGATCGATAGATGCTGGAGATGCGATAAAAATTGGGCTAACAATCGAAAGAAGCTAGCCGAGTGCCCGTTAGGGTTTGGCCACCAAACCATCGGCGGAAAGAGAGGACACATCTACGTGGTGACCGACGCATCTGATGATAACTTGGTTGACCCCAAGCCCGGAACCCTCCGCCATGGCGTGATTCAAAAAGGTCCACTTTGGATCATTTTTGGACGTAGCATGGTCATCAGGCTAGCCCAAGAGCTGATGATCTCAAGCGACAAAACCATCGATGCTCGTGGCTTTAATGTTCACATTGCCTATGGCGCTGGCCTCACCATTCAATTCGCCCACAATGTTATCATCCATGGCCTTCACATCCATAATATCATCTCCAAATCCGGTGGCTATATTAGAGATTCCGTTGATCATTATGGATTTAGAACACAAAGCGATGGCGATGGTATCTCCATCTTTGGCTCTTCTCATATATGGATCGACCATGTTTCCATGTATGCATGCCAAGACGGCCTCATCGATGCCATCATGGGTTCCACCGGCATCACCATTTCCAATAGTCATTTCACTCATCACAACGAGGCGATGTTATTCGGAGCAAGCGATAGCTACAAAGAGGACGAGATCATGCAAATAACCCTCGCATTCAACCACTTCGGGAGGGGATTGGTGCAAAGAATGCCAAGGTGTAGATTTGGGTTCTTCCATGTGGTAAACAATGACTACACCCATTGGCTAATGTATGCCATCGGAGGTAGCCAACATCCAACCATCGTGAGCCAAGGCAACCGATTCATTGCGCCACAGAACATCAATGCAAAAACGATAACAAAGAGAGAGTATGCAGATGAGAGTGAGTGGAAGAAGTGGTCGTGGAGATCGGAAGGGGATTTGTTGCTGAATGGTGCGGTGTTTGTTGGGTCGGGAGACCAAACCAAAGGGAAGAAGAAGGACTTGTCGAGGTATGACATGATTTCGTTCAAGCCAGGGTCTTATGTGAAGAGACTTTCAACGAAGCTAGCACGTAGAGAGGGATCGCCTGTGGGACAGGGGTCAAGGTCGACCAATGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCACGGATCACCAGCTAAGACCCCTAAATGACCGCTCAATGATAAATGAGGTAGGGGTGCAGAGACATCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGA 1473 48.13 MAGFRILFVFSLLYFVAAYTDANVDVDDHDEYWLTRANEAKKVAQDAYNPKPESVTEHLNVAVRLAMVGDNSTRRSLNKYKGPCLKTNPIDRCWRCDKNWANNRKKLAECPLGFGHQTIGGKRGHIYVVTDASDDNLVDPKPGTLRHGVIQKGPLWIIFGRSMVIRLAQELMISSDKTIDARGFNVHIAYGAGLTIQFAHNVIIHGLHIHNIISKSGGYIRDSVDHYGFRTQSDGDGISIFGSSHIWIDHVSMYACQDGLIDAIMGSTGITISNSHFTHHNEAMLFGASDSYKEDEIMQITLAFNHFGRGLVQRMPRCRFGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPQNINAKTITKREYADESEWKKWSWRSEGDLLLNGAVFVGSGDQTKGKKKDLSRYDMISFKPGSYVKRLSTKLARREGSPVGQGSRSTNETMGDKLHRREGNSTDHQLRPLNDRSMINEVGVQRHPGGLPRSSHP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8166679 8170671 + Carg21912-RA Car05g00827 149213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00827 490 MobiDBLite consensus disorder prediction 446 462 - -
Car05g00827 490 MobiDBLite consensus disorder prediction 427 490 - -
Car05g00827 490 Pfam Pectate lyase, N terminus 27 77 IPR007524 GO:0030570
Car05g00827 490 Pfam Pectate lyase 194 353 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00827 Car-Chr5:8166679 Car11g00874 Car-Chr11:5436999 0 dispersed
Car12g00671 Car-Chr12:4585982 Car05g00827 Car-Chr5:8166679 0 wgd
Car04g01674 Car-Chr4:9637243 Car05g00827 Car-Chr5:8166679 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00827 K01728 - csv:101217922 715.301