Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00854 ATGGCTGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCTTTTCAGATGAGAGCGGTTTTTACGCGAGATTGCATATTGAGCCTATTTACGATTCGTTTTTGTGCCCTTTAACAAAGAAAGTAATGCGGGATCCTGTTACTATAGAAAGTGGGCAAACTTTTGAGCGTGCGGCCATTGAGATGTGGTTCAACGAATGCAGGGAGAGTAGAAGGAAGCCAATCTGTCCAATGACACTAAAAGAATTAAGAACCACGGATCTGAATCCCAGTATTGCTCTGCGAAATACTATTGAAGAGTGGACTGCGAGGAATGAAGCTGTTCAGCTAGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAAAGAAACATTGGGATCTTTGAAGTATGTTCAACATGTCTGCCAAAAGGGTTTGTCGAGGCACATCGCACGAAATGCGGGGTTAATACCTATGATCGTTAGCTTGTTGAAGAGCACCAGTCGAAGAGTTCAGTTTAGAGCTTTGGAAACGCTTAAAATTGTGGTGCAAGAAGACAATGAGTGTAAGGAAATGTTAGCTGAAGGTGACACTCTTCGCACGGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAAAGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCACGTCCCAAGACTTGTGTGAAAAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCAAGCAGCAGATCTGAGAACATCACCACAGTTGAAAATGCCGAGAGAACATTAGAGAATCTGGAGACATGTGAGAATAATATTCGACAAATGGCTGAATATGGTAGGCTGAGGCCTCTTCTGACCCAGATTCTTGAAGGTCCCCCAGAAACTAAACATTCTATGGCTGCACATTTGGGCGAGCTAGTTCTAAATAATGACGACAAACTCTTTGTGGCTCAGACCGTGGGGCCGTCGCTAATTAATATCATGAGGAGTGGTGATAAGCAGGCAAAAGAAGCTGCATTAAAAGCCTTGAACCAGATTTCGTCTTTTGAGGCTAGTGCACGAGTTTTGGTACAGCAAGGGATACTGCCACCTCTCGTTCGGGATCTTTTTGCAGTTGGTTCGAACCCACTTCCCATGAAACTAAAAGAAGTATCTGCTACAATTCTTGCCAATATTGTTAGCTCAGGAAGTGATTTCAATTCCATTCCAGTGGAACCTAATAATCAGACCACACTTGTCTCTGAAGCTACTATACATAGCCTGCTACAACTCATTAGCAATACCGGTCCAGCCATTGAATGCAAGCTTCTCCAGGTTCTTGTTGGACTTACGAGTTCTCCTTCAACTATTTCGAGTATTGTTAATGCCATTAGAAGCTCTGGTGCAATAATCAGCTTGGTTCAATTTATCGAGGCCCCACAGCTGGACTTGCGTGTTTCTGCTATAAAGCTCCTCCAGAACATCTCCCCACACTTAAGCCAGGAGCTAGCAGATGCGCTACGTGGTTCGGTTGGCCAGCTGAGCAGTTTATTTAGAATCATAGCTGAAAATACAGGAATCACAGAAGAACAAGCAGCTGCTGTGGGGCTTCTAGCTGATCTCCCTGAAAGGGATTTAGGCCTCTCCCGGCAGATGCTTGATGAAGGAGCTTTTGAGTTGGTCCACCTTAGAATTTTTCAACTCCGCCAAGGGGGGACTAGGGGAGGCCGATTTTTAACACCATTCCTCGAAGGCCTTGTTCGAATTCTTGCAAGGATTACATTTATACTGGCTGATGAACCTGATGCTGTTGCATTTTGTCGCAACCGCGATCTTGCTGCTTTATTCATCGAACTGCTTCAGTCTAATGGACTTGACAATGTGCAGATGGTTTCAGCCATGGCATTGGAAAATTTATCTTTAGAATCTAAAACTTTGACTCAGTTACCTACACTTCCAGAACCAGGATTTTGTGCCTCAATTTTCCCATGCTTCAGCTCACAACCGGTGCTGACAGGGCTGTGTCCTCTCCACCGGGGTACATGTTCTTTGAAGGAAACTTTTTGTCTTTTGGAAGGTAATGCAGTCGACAAATTGGTAGCCCTTTTAGATCACGCAAGTGAGAAGGTCGTTGAGGCAGCACTTGCAGCACTATCTACTTTGTTGGATGATGGGGTCGACGTTGAGAAGGGCGTGAACATTTTACACAATGTAGATGGGGTTCAGCCTATATTTAACGTGTTGTTTGAAAACCGCTCAGAGAATCTGATGAGACGGGCAGTTTGGACAGCCGAGAGGCTGTTGCGCAACGACGACATCGCTATCGAATTCTCGAACAATCCAAACGTGAATACAGCACTTGTCGATGCCTTCCAGCATGGTGACTACAAAACAAGGCAAATCGCTGAGCGTGCCTTGAGACATGTTGATAAGTTACCCAACTTCTCCAATATATTTCCTAATCCTGGTACGTAG 2448 44.57 MAESWDGSYDDSGSFSDESGFYARLHIEPIYDSFLCPLTKKVMRDPVTIESGQTFERAAIEMWFNECRESRRKPICPMTLKELRTTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPEKETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRRVQFRALETLKIVVQEDNECKEMLAEGDTLRTVVKFLRHERSKEKEEAVALLYELSTSQDLCEKIGSVNGAILILVGMSSSRSENITTVENAERTLENLETCENNIRQMAEYGRLRPLLTQILEGPPETKHSMAAHLGELVLNNDDKLFVAQTVGPSLINIMRSGDKQAKEAALKALNQISSFEASARVLVQQGILPPLVRDLFAVGSNPLPMKLKEVSATILANIVSSGSDFNSIPVEPNNQTTLVSEATIHSLLQLISNTGPAIECKLLQVLVGLTSSPSTISSIVNAIRSSGAIISLVQFIEAPQLDLRVSAIKLLQNISPHLSQELADALRGSVGQLSSLFRIIAENTGITEEQAAAVGLLADLPERDLGLSRQMLDEGAFELVHLRIFQLRQGGTRGGRFLTPFLEGLVRILARITFILADEPDAVAFCRNRDLAALFIELLQSNGLDNVQMVSAMALENLSLESKTLTQLPTLPEPGFCASIFPCFSSQPVLTGLCPLHRGTCSLKETFCLLEGNAVDKLVALLDHASEKVVEAALAALSTLLDDGVDVEKGVNILHNVDGVQPIFNVLFENRSENLMRRAVWTAERLLRNDDIAIEFSNNPNVNTALVDAFQHGDYKTRQIAERALRHVDKLPNFSNIFPNPGT 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8389883 8401205 - Carg21885-RA Car05g00854 149240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00854 815 Coils Coil 253 273 - -
Car05g00854 815 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Car05g00854 815 Pfam Armadillo/beta-catenin-like repeat 685 712 IPR000225 GO:0005515
Car05g00854 815 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00854 Car-Chr5:8389883 Car18g01002 Car-Chr18:10449766 3.79E-129 dispersed
Car05g00854 Car-Chr5:8389883 Car04g01423 Car-Chr4:8251197 3.92E-33 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00854 - - bhj:120075341 1406.35