Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00872 ATGGTGGGTGTTTTCCGGCGATCTCTTTCTTTCCAGCCGGGCTCGGCTGCCGCCCGTCACCCGAACCCCCGAATCTCCCGCCATCTCCGATCCATCAGTTTACCATGCAGATCCCACCCCTTGATCTCTTCCCTCAACGATGAGATCGCCAATCTCAAATCCTGGCCGTCCACCGACCACCGTAACGCCGCTTGGCTATGCAGTGGTCTCAATGCCGTGAAGCTCGTACATGACTATCTCGACGACATACTCCAACTCCCACAATCACGTGAGTCGATATGTCGATTCTCGACATGGGTCGAAAACGTTCTAGAAGACTTCCTTCGATTCATCGACGCGTATGGAATCTTCCAAAGCCTTGTCCTCACCTTCCGAGAGGAGCATGTGGCGGCGCGTGTGGCCATGCGGAGAAATAACGAGATGAAATTAGACATGTACAAGAAAGCCCGGAAACGAATGGGGAAAGAAACGACTAAATTGGGTTCGGTTGTTCGAGTTGTGACGGTGACGGAGGTTCCTGAGGAGGAGCTCGCGGTGGCGATTAAGGGCGTGATGGAGGTGACGGGGATGGTTTCGGTGGCGATGTTCGAGGGGATCGGGACGTCGTTGGGATGGAGACGGAATAGGTGGATGAGGAAGGGGAAGAAGGTGGAGAATGGGATATTGGAGTTCATGGAAGTGAGTAACAATGGCGATAATGAAGTGAAGGTGAGGATGGAGAAGATGAAGGATTTGGAGGAGTGGATTGGAAGCATTGAGAATGTGACTGAAAAGCTCTTAAGAACTTTGATGAACACTAGGGTTTCTATACTCAATGCTCTCTCGCATTAA 831 51.62 MVGVFRRSLSFQPGSAAARHPNPRISRHLRSISLPCRSHPLISSLNDEIANLKSWPSTDHRNAAWLCSGLNAVKLVHDYLDDILQLPQSRESICRFSTWVENVLEDFLRFIDAYGIFQSLVLTFREEHVAARVAMRRNNEMKLDMYKKARKRMGKETTKLGSVVRVVTVTEVPEEELAVAIKGVMEVTGMVSVAMFEGIGTSLGWRRNRWMRKGKKVENGILEFMEVSNNGDNEVKVRMEKMKDLEEWIGSIENVTEKLLRTLMNTRVSILNALSH 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8513018 8513848 + Carg21867-RA Car05g00872 149258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00872 276 Pfam Protein BPS1 69 272 IPR004320 GO:0048364|GO:0048367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00872 - - - cmos:111454281 389.423
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car01g01575 Car05g00872 CCT
Car05g00872 Car12g00649 CCT
Car05g00872 Car09g00056 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00585 Car-Chr3:5546936 Car05g00872 Car-Chr5:8513018 4.05E-11 dispersed
Car05g00872 Car-Chr5:8513018 Car09g00056 Car-Chr9:279742 2.73E-89 dispersed
Car01g01575 Car-Chr1:13082093 Car05g00872 Car-Chr5:8513018 1.34E-84 wgd
Car12g00649 Car-Chr12:4392140 Car05g00872 Car-Chr5:8513018 6.49E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g120 Blo01g01621 Blo12g00862 . . Bpe02g00321 . Bma04g00278 . Cmo05g01008 Cmo12g00607 Cma01g02006 Cma09g00064 Car01g01575 Car12g00649 Sed11g0838 Cpe06g00031 Cpe07g00583 Bhi04g01561 Tan02g1535 Cmetu03g2046 . Hepe08g1486 . Lcy13g2250 Cla08g00961 . . . . . . . . . . Lsi04g01795 Csa04g02689 . Cme03g01355 . . Bda11g00959 . . . . . Sed01g2448 Cmo01g02064 . Cma12g00668 Cma05g00990 Car05g00872 Car09g00056 Cpe11g00799 Cpe02g00043 Bhi09g02922 Tan01g5088 Cmetu07g1010 . Hepe01g2329 Mch11g0066 . Cla11g01814 Cam11g1880 Cec11g1903 Cco11g1911 Clacu11g2044 Cmu11g1849 Cre11g2254 Lsi08g00801 . Chy07g00380 Cme07g00067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012951 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00872 Car_Chr05 FPKM 29.404306 31.415194 36.681328 37.251667 49.411251 45.68964 51.269745 36.700638 40.782852 44.967186