Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00873 ATGGGCTGCGCTTCCTCCAAGCTCGACAATCTTCCGGCGGTGGTTCTTTGCCGTGACCGCTGCAAGTTTCTTGACCAAGCTCTCGTTTTTACCCATTCCCTTATTGATTCCCACTCTGCTTATGCTGATTCACTCAACAAAGTCGCCTCCGCTCTCCGCCGTTTGTTTGACCAAGATGGTGAAAGCTGCGGCGGCGGCGGTGGCGATTTGAAATGTCCTCCTCCGCCGTCTGCCGCTACTTCATCGGAGCGATCTGATTCTGATTCTGATTCCGACTCCGATTCGGAATTGGACGATGAAGAAGATGGGTGTTTTACACAAGAGAAACCACGATCTCCCCAGATCGGAAATTTAATGTTCTCGAATTACGATTCGGCGAGGGGACAACCACCGCCGCCGCCGCCGACTGGCTCATCGTGGGATTTCTTCAATTTCTTCGAAACCTACGAGAGATACGAACAACCCAATTTCAATTGGGACCCAGATCAAAAACCAGGAACAACAAGAGTTGTAACGAACAAGAAGAAGAAGCAGAAGAAACCTCCGGTGGTGGCTCCGCCGGAGAAATTAAACCAACCGGAAAAGAAAATCGATGAATCAAAAATGGGTGTCGTGGATTTAATGACAGAAATCAAGGGTTCGTTTGAAAAAGCATCTGAATCAAGCAATTCCATTTCCAAGCTGCTTTCTTATGGCCAAAGAATGAGTTTCTGCAAAGATTCAAGAACAAGCTCTCGAGGGCTGCTATCTACCTTGAAGAAGCTCTGTGTTTGGGAGCAGAAACTGTACCTGGAAGTGAAGGCTTTGGAGAGATTGCGTATGATTCTTGAAAAGAAATGCCGGCAGCTGAAGAATTTGGTGGAGAAGAACGCCGATGGTCGGAAAATTGATTCAGTTCGTAGCTCGATCAGAAATTTATCGATCAAATTGAATGTTTCAATTCAGGTGGTTGATCGGATTTCGATCACCATTAGTAAGCTGAGGGATGAAGAATTTTTGGCAGAAATGAATGAATTGACTCATGGATTACAGAGCATGTGGAAAGCCATGTCGGAAGCTCACAAGCAGCAAACTCAAGCATTAACGGACGCCAAACCCTTCGAATCAGTCCTCAACGGCGCCTTGGACGACGCGCATCTGGAAGCCGCCATGGATTTAAAGCTCGAGCTCGAGAATTGGAGATCAAATTTCGTGAACTTAATCGCCACGCAAAAGGATTGCATCAAAGCTCTCAACGGTTGGCTACTCCGGTGCCTATTACACGAACCCGAGCCGGAAGAAACCCCGAATGGCGGCTGTCCGCCGCCATTCTCTCCTGCGAGAATCGGTGCTCCTCCTGTATTCGTAATAGCGTACCTCTGGTCCGACACGGCGGACAAATTCTCCGACAAGGATGTCTCTGAGGCGATACAGGGGGTGGTGTCGAAGTTGGATGAGGCGCTGGAGCAGCAGAGTTGGGATTTGCAGAGATTGGCGTTGGGGAACAGAGATTTGGAGAAGAAGATTAAGGCGAAGAAGATGAATCAAGAAATTGAGGAGAAGACAACGGCGGCGGTGGCGGCGGGGACTGTGCATAAAGTGGGTAAGTTTAATGGGTGTGAGATTCAACAGGGGGTGAGGCAGGTTTTTGTGGGGTTGACGAGGTTTTGTGGGGACTCCATTACAGCATACGAGGAGCTCTGTTCTTCAGCCATAGCTCAGAGCCAGCCAGGTCCGCCATAG 1722 49.01 MGCASSKLDNLPAVVLCRDRCKFLDQALVFTHSLIDSHSAYADSLNKVASALRRLFDQDGESCGGGGGDLKCPPPPSAATSSERSDSDSDSDSDSELDDEEDGCFTQEKPRSPQIGNLMFSNYDSARGQPPPPPPTGSSWDFFNFFETYERYEQPNFNWDPDQKPGTTRVVTNKKKKQKKPPVVAPPEKLNQPEKKIDESKMGVVDLMTEIKGSFEKASESSNSISKLLSYGQRMSFCKDSRTSSRGLLSTLKKLCVWEQKLYLEVKALERLRMILEKKCRQLKNLVEKNADGRKIDSVRSSIRNLSIKLNVSIQVVDRISITISKLRDEEFLAEMNELTHGLQSMWKAMSEAHKQQTQALTDAKPFESVLNGALDDAHLEAAMDLKLELENWRSNFVNLIATQKDCIKALNGWLLRCLLHEPEPEETPNGGCPPPFSPARIGAPPVFVIAYLWSDTADKFSDKDVSEAIQGVVSKLDEALEQQSWDLQRLALGNRDLEKKIKAKKMNQEIEEKTTAAVAAGTVHKVGKFNGCEIQQGVRQVFVGLTRFCGDSITAYEELCSSAIAQSQPGPP 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8516870 8518837 + Carg21866-RA Car05g00873 149259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00873 573 MobiDBLite consensus disorder prediction 63 140 - -
Car05g00873 573 MobiDBLite consensus disorder prediction 89 103 - -
Car05g00873 573 Pfam Protein of unknown function (DUF632) 239 477 IPR006867 -
Car05g00873 573 MobiDBLite consensus disorder prediction 154 196 - -
Car05g00873 573 Pfam Protein of unknown function (DUF630) 1 58 IPR006868 -
Car05g00873 573 Coils Coil 266 289 - -
Car05g00873 573 MobiDBLite consensus disorder prediction 110 124 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00873 - - - csv:101213768 849.736
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00167 Car-Chr2:988516 Car05g00873 Car-Chr5:8516870 4.81E-06 dispersed
Car05g00873 Car-Chr5:8516870 Car19g00606 Car-Chr19:7552476 2.76E-12 dispersed
Car20g00624 Car-Chr20:3497269 Car05g00873 Car-Chr5:8516870 9.66E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g121 . . . . . . . . Cmo05g01009 . . . . . Sed11g0843 . . Bhi04g01560 Tan02g1536 Cmetu03g1244 . Hepe08g1485 . Lcy13g2249 Cla08g00962 . . . . . . . . Cone17ag1442 Cone20ag0035 . . . Cme03g01356 . . . . . . . . . . . . Cma05g00991 Car05g00873 . Cpe11g00800 . . . . . . . . . . . . . . . Lsi08g00802 . Chy03g00631 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012946 0 1 0 0 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00873 Car_Chr05 FPKM 35.470501 37.209011 40.065239 44.988277 65.134125 51.977337 63.991261 43.287609 40.310429 47.705376