Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00876 ATGCTCTCTCTCAATTCCATTTCTCAATTCCTCGTTCCATTCATCTGTGGCTGTGTTAAATTCCCCATTCTTCATCGTCGCCCTTCAGAGAAACCAACCTCTCGGGGCGCAGCCATGATTACTCGATCGAATCTGGTTGAACAGTTGAGAGAATACCAGATTCGATCCAAGCACGACTGGGCTTCCGCCTCCTTCTTCTCCTCTACCTCTAATATTACATCCTCCAGGGTGGATATAGTCATTTTTGTAATATGGGAACTCATAATTCTATCCTTCTTGGTGTTTTCGGCGGTTTCTTTATATTTTCGACATATGCAGTTGACTTTCGTTTTAGTATGCATAACGATGTTGTTGATTGTATGCATGAAAGTAACAAAGCAAATGAGATTGGCTAGGAAGAAGAAAAGAAGGATGCTTCTTCCATTGTCCATGTGA 435 41.84 MLSLNSISQFLVPFICGCVKFPILHRRPSEKPTSRGAAMITRSNLVEQLREYQIRSKHDWASASFFSSTSNITSSRVDIVIFVIWELIILSFLVFSAVSLYFRHMQLTFVLVCITMLLIVCMKVTKQMRLARKKKRRMLLPLSM 144
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8546291 8548566 - Carg21863-RA Car05g00876 149262

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00876 - - - bhj:120075129 197.593
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g00876 Car12g00647 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00647 Car-Chr12:4378419 Car05g00876 Car-Chr5:8546291 1.24E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g131 . . . . . . . . Cmo05g01012 Cmo12g00605 . . . Car12g00647 Sed08g1824 . Cpe07g00581 Bhi04g01553 Tan02g1543 Cmetu03g1408 . Hepe08g1476 . Lcy13g2246 Cla08g00965 Cam08g1414 Cec08g0993 Cco08g1116 Clacu08g1117 . Cre08g0901 . . . . . . . Cme03g01359 Blo17g00718 Blo18g00752 Bda08g01178 Bda01g01554 Bpe02g01749 Bpe05g00170 Bma01g00708 . . . . Cma12g00666 Cma05g00994 Car05g00876 . . . . . . . . . . . . . . . . . Lsi08g00805 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004591 3 1 2 1 3 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00876 Car_Chr05 FPKM 0.08416 0.124067 0.070726 0.064575 0.071178 0.0 0.017867 0.266274 0.199539 0.154455
Car05g00876 Car_Chr00 FPKM 0.05119 0.0 0.0 0.0 0.0 0.0 0.0 0.203072 0.152726 0.0
Car05g00876 Car_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
Car05g00876 Car_Chr00 FPKM 0.260043 0.353275 0.097414 0.07371 0.044211 0.156481 0.0 0.576878 0.45631 0.457953