Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00880 ATGGAAGATAAGGCGCCGCCACCCACCACCGTACTTCAACCTATCCGTTGTAAAGCTGCTGTGTGTCGTAAGCCGGGGGAGGCACTAGTGATGGAGGAGATAATGGTGGCGCCGCCTATGGCTCATGAAGTTAGGATTAGGATAATATGCACCTCTTTGTGTTACAGTGACATTACCGTCTGGAAGATGAAGGATCCTCCTGGGATTGTTCCTAGAATTCTTGGCCACGAAGCCATCGGAGTGGTTGAGAGTGTAGGGGAGGATGTGAATGAAGTTAAGGAAGGAGATACTGTCATCCCAACATTCATGGCTGACTGTGGGGACTGTAAAGATTGCTTATCAAATAAGAGCAATTTATGTTCAAAGTTGCCTTTCAGTGTGTCTCCTGGACTGCCCCGATGTGGGACAACCAGATTCACAGATCTCAATGGAGAGGCTATTCATCACTTTCTGTTTGTTTCAAGTTTCAGTGAATACACCGTGGTTGATGTCGCCAATGTAACCAAAGTAGATCCTGCTATCCCTCCAAATAGGGCATGCCTCCTCAGCTGTGGGGTATCAACAGGGGTTGGTGCAGCATGGAGAACAGCAAATGTGGAGAAAGGATCCACCGTTGCCATATTTGGAATAGGGTCCATTGGTTTAGCTGTCGCTGAAGGGGCAAGACTATGTGGAGCAGCCAGGATTATTGGGATAGATTTCGGAGTCACTGAGTTTGTCAATTCTAGAAGCCTCGGCGATAAATCAGTAAGCCAGGTGATTAATGAAATGACCGGTGGTGGAGCAGACTATTGCTTTGAATGTGTTGGGTTGCCTTCCTTAGTTCAAGAGGCATATGCATGTTGCAGACAGGGTTGGGGAAAAACCGTCGTGTTAGGAGTGCACAAACCAGGATCGGTATTGAGTTTTGACTCGTTGGATGTTCTTCATACTGGAAAGACTCTTGTAGGATCATTGTTCGGAGGATTAAAGCCAAAATCTGATATTCCTGTTCTCCTTCAATGGTACATTGATAAGATGCGTTTTAAAGCTCAAAGAGGACAGTATCTGCTAGCGATGGGCTTGGACCGTTACAAATGGTATCAGAGCCAGACATCGGACCAGCCTTCTCGCTGTTCCTTGGGAGGTAGACACCAGACGGTGTGCCATGAAGACGTCGTCGGAGAGGACGGACTCTTATCACCGACAAACTCCTTCCGACCTCCGTCATGGAAGATAACTCCTCGGCTGCAACTGGACTTCACTCTATCCGCTGCAGAGCCTGGGGAGCCGCTAGTGATTGAGGAGATAATTGTGGCGCCGCCTATGGCTCATGAAGTTCGGATTCGGATAATATGTACCTCTTTGTGTCACAGCGATCTCACGTTCTGGAAGATGAAGGATTTTCCAGGGATTGTTCCTAGAATTCTTGGCCACGAGGCAATCGGAGTGGTTGAGAGTGTAGGAAAGGATGTGAATGAAGTTAAGAAAGGAGATACAGTAATCCCAACATTCATGGCTGACTGTGGGGACTGTAAAGATTGCTTATCAAATAAGAGCAATCTATGTTCAAAATTGCCTTTCAGTGTGTCTCCCGGAATGCCCCGATGTGGGACAAGCAGATTCACAGATCTCAATGGAGAGGTTATTCATCATTTTCTGTTTGTATCAAGTTTCACTGAATACACTGTGGTAGATGTCGCCAATGTAACCAAAGTAGATCCTGCAATCCCTCCAAACAGGGCATGCCTTCTTAGTTGTGGGGTAACAACAGGGGTTGGTGCGGCATGGAGAACAGCAAATGTAGAGAAGGGATCCACTGTCGCCATATTTGGACTAGGGTCCATAGGTTTAGCTGTTGCAGAAGGAGCAAGAATATGTGGAGCAAGCAGGATTATTGCGAAGAAGTTTGGAGTCACTGAGTTTGTTAATACCAGAAGTCTTGGGGATAAATGTGTGAGCCAGGTGATTATTGAAATGACTGGTGGAGGTGCAGACTATTGCTTTGAATGCGTTGGAATGGCTTCCTTAGTTCAAGAAGCATTCACATGCTGTAGACAGGGTTGGGGTAAAACAATCGTGGTGGGAGTGGACAAGCCTGGATCACTATTGAATCTTAGCTCTTACGAAGTCCTTCATCGTGGGAAGACTATCATGGGATCCTTGTTCGGGGGAACAAAGCCCAAATCAGATATTCCCACCCTCCTTAACTGGTACACGGATAAGAAACTTGAGCTGGATAAATTTGTGACCCACGAAGTAAGTTTTGAAGATATCAACGAAGCTTTTAATCTGCTAATTGATGGAAAGTCCTTGAGATCTGTGATTTGGATGAACAATTGA 2322 46.21 MEDKAPPPTTVLQPIRCKAAVCRKPGEALVMEEIMVAPPMAHEVRIRIICTSLCYSDITVWKMKDPPGIVPRILGHEAIGVVESVGEDVNEVKEGDTVIPTFMADCGDCKDCLSNKSNLCSKLPFSVSPGLPRCGTTRFTDLNGEAIHHFLFVSSFSEYTVVDVANVTKVDPAIPPNRACLLSCGVSTGVGAAWRTANVEKGSTVAIFGIGSIGLAVAEGARLCGAARIIGIDFGVTEFVNSRSLGDKSVSQVINEMTGGGADYCFECVGLPSLVQEAYACCRQGWGKTVVLGVHKPGSVLSFDSLDVLHTGKTLVGSLFGGLKPKSDIPVLLQWYIDKMRFKAQRGQYLLAMGLDRYKWYQSQTSDQPSRCSLGGRHQTVCHEDVVGEDGLLSPTNSFRPPSWKITPRLQLDFTLSAAEPGEPLVIEEIIVAPPMAHEVRIRIICTSLCHSDLTFWKMKDFPGIVPRILGHEAIGVVESVGKDVNEVKKGDTVIPTFMADCGDCKDCLSNKSNLCSKLPFSVSPGMPRCGTSRFTDLNGEVIHHFLFVSSFTEYTVVDVANVTKVDPAIPPNRACLLSCGVTTGVGAAWRTANVEKGSTVAIFGLGSIGLAVAEGARICGASRIIAKKFGVTEFVNTRSLGDKCVSQVIIEMTGGGADYCFECVGMASLVQEAFTCCRQGWGKTIVVGVDKPGSLLNLSSYEVLHRGKTIMGSLFGGTKPKSDIPTLLNWYTDKKLELDKFVTHEVSFEDINEAFNLLIDGKSLRSVIWMNN 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8578040 8590823 + Carg21859-RA Car05g00880 149266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00880 773 Pfam Zinc-binding dehydrogenase 605 732 IPR013149 -
Car05g00880 773 Pfam Zinc-binding dehydrogenase 213 335 IPR013149 -
Car05g00880 773 Pfam Alcohol dehydrogenase GroES-like domain 438 565 IPR013154 -
Car05g00880 773 Pfam Alcohol dehydrogenase GroES-like domain 42 169 IPR013154 -
Car05g00880 773 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 471 485 IPR002328 GO:0008270|GO:0016491
Car05g00880 773 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 75 89 IPR002328 GO:0008270|GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00880 K00121 frmA, ADH5, adhC; S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase [EC:1.1.1.284 1.1.1.1] - csv:101206456 638.647
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00880 Car-Chr5:8578040 Car17g01262 Car-Chr17:9581163 3.31E-102 dispersed
Car20g00941 Car-Chr20:10326946 Car05g00880 Car-Chr5:8578040 6.40E-09 dispersed
Car05g00879 Car-Chr5:8567869 Car05g00880 Car-Chr5:8578040 1.12E-172 tandem
Car05g00880 Car-Chr5:8578040 Car05g00881 Car-Chr5:8601876 2.14E-150 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g134 . . . . . . . . Cmo05g01018 . . . . . . . . Bhi04g01547 Tan02g1550 . . Hepe08g1466 . . . . . . . . . . . . . . . . Cme03g01365 Blo17g00721 . Bda08g01180 . . . . . . . . . Cma05g00998 Car05g00880 . Cpe11g00807 . . . . . . . . . . . . . . . Lsi08g00814 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00880 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0