Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00887 ATGAATCCAATGATGAGTATGGGGAGCGAGGAGAAATGGTGCGTTGTTACTGGAGGGAGAGGTTTCGCTGCACGACATCTCGTTGAGATGCTGATCAGTTCCAAAATGTTTTCCGTTCGAATCGTTGATTTAGGCTCCTCCATTGAATTGGAAGCAAGTGAGGAGAAAGGGATTCTCGGAGAGGCATTGCGTTCTGGTCGTGCTCAATATGTTTCAGCCGATCTTCGTGATAAAGCTCAATTGCTCAAAGCGTTTGAAGGAGTGGAGGTTGTTTTCCATATGGCTGCTCCGAATTCATCCATTAACAATTACAAACTTCATTATTCGGTCAACGTTGAAGGAGCCAAGAATGTAATTGACGCTTGTGTCGAGAAAAATGTAAAGCGGCTAATATATACTAGTTCGGCCAGTGTAGTGTTTGATGGGATAAATGGACTTGTTAATGCAGATGAGACACTGCCTTACGCATCGAAGCACAATGATTTCTACTCTGCGACTAAAGCTGAGGGGGAAGCTTTGATCCTCAAGGCAAACGGCTTAAATGGACTTCTAACATGCAGCCTAAGGCCCAGTGGCATCTTTGGCCCTGGTGATAGTTCATTATTGGGCAACAACACCTATGACTTTACTTATGTTGAAAATGTGGGACATGCCCATGTGTGTGCTGAGCGAGCTCTAGCTTCAGGAGGAATGATTGCAGAAAAAGCTGCAGGGCAGGCTTATTTCATAACCAACATGGAACCCATAAAGTTTTGGGAGTTTGTCTCACTTATACTGGATGGCCTTGGCTATGAAAGGCCAAGAATAAAAATCCCTGCCTACCTAGTGATGCCGATTGCACATATGGTGAACTGGATTTATACGCTTTTAGGTCCTTATGGAATGCCTGTCCCACAGTTTACTCCTTCCCGTATAAGACTCCTCTCTTGTTGTAGAACTTTTAACTCCTCAAAGGCCAAGGATCGACTTTTCTATACCCCCATTGTTTCACTTCAGGAGGGTATAGAAAGGACAATAGAAGCCTACTCCCATTTAAAGGCTGTGCATCAGCAAAAAAGAGAAGGGCCATCCAAAGCCTCAATATACCTCAGAGGAGGAACGGCTGCTGACATTTTACTCTGGAAGGATAAAAGGAAGACATTGATAGCATTGCTAGTTTTGATGGCTATTTATTATAACTTCATTGCTCCTGCGTGTACCATGATCACTGCACTGTCGAAGCTTCTCTTGGTAGCATTCATATTTCTGTTTATTCATGGGATTTTACCAGAAAAAATGTTTGGATATCAAGTTGAGAAAATTTCCTCTTCATGTTTTTCCTTGTCAGAAGAGAGGTCACGAAGCATTGTCATCAATATTGCATCATTTTGGAATTCTTTCGTTAGAAATTTTAGATCTCTTTCCAGAGGGAATGATTGGGTGCGCTTGCTTAAGGTTTCTGTATCACTGTTGGCTCTTAGCTTTCTTGGACTGGTTTCTCTTCAAACTTTATATAAGACAGTTGTTCTATTCGCCTTCACGGTTTTCTTCGTATACGAGAAAAAGGAGCAAGAGATCGATTCTTTGTGTCAAAAATTTCAATTTTGGACGCAAAAGAAATGCAATTTGGTCGGAAAAGTTTCTACTTCACAAGGATAA 1638 41.88 MNPMMSMGSEEKWCVVTGGRGFAARHLVEMLISSKMFSVRIVDLGSSIELEASEEKGILGEALRSGRAQYVSADLRDKAQLLKAFEGVEVVFHMAAPNSSINNYKLHYSVNVEGAKNVIDACVEKNVKRLIYTSSASVVFDGINGLVNADETLPYASKHNDFYSATKAEGEALILKANGLNGLLTCSLRPSGIFGPGDSSLLGNNTYDFTYVENVGHAHVCAERALASGGMIAEKAAGQAYFITNMEPIKFWEFVSLILDGLGYERPRIKIPAYLVMPIAHMVNWIYTLLGPYGMPVPQFTPSRIRLLSCCRTFNSSKAKDRLFYTPIVSLQEGIERTIEAYSHLKAVHQQKREGPSKASIYLRGGTAADILLWKDKRKTLIALLVLMAIYYNFIAPACTMITALSKLLLVAFIFLFIHGILPEKMFGYQVEKISSSCFSLSEERSRSIVINIASFWNSFVRNFRSLSRGNDWVRLLKVSVSLLALSFLGLVSLQTLYKTVVLFAFTVFFVYEKKEQEIDSLCQKFQFWTQKKCNLVGKVSTSQG 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8653008 8664572 + Carg27029-RA Car05g00887 149273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00887 545 Gene3D - 4 347 - -
Car05g00887 545 ProSiteProfiles Reticulon domain profile. 368 520 IPR003388 -
Car05g00887 545 Coils Coil 512 532 - -
Car05g00887 545 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 9 347 - -
Car05g00887 545 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 343 IPR036291 -
Car05g00887 545 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 9 347 - -
Car05g00887 545 Pfam Reticulon 369 525 IPR003388 -
Car05g00887 545 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 15 201 IPR002225 GO:0003854|GO:0006694|GO:0016616
Car05g00887 545 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 204 271 IPR002225 GO:0003854|GO:0006694|GO:0016616
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00887 K23558 3BETAHSDD; plant 3beta-hydroxysteroid-4alpha-carboxylate 3-dehydrogenase [EC:1.1.1.418] - csv:101205275 926.391
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00887 Car-Chr5:8653008 Car06g01373 Car-Chr6:9869718 3.73E-137 dispersed
Car05g00887 Car-Chr5:8653008 Car01g01607 Car-Chr1:13212374 1.79E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g182 . . . . . . Bma04g00296 . . . . . . . . . . Bhi04g01534 Tan02g1571 . . Hepe08g1449 . Lcy13g2234 . . . . . . . . . Cone17ag0956 Cone20ag0300 . . . . Blo17g00268 . . Bda13g01581 Bpe14g00288 . . Bma02g00332 . . . . . . Car05g00887 . . . . . . . . . Cla08g00977 Cam08g1426 Cec08g1004 Cco08g1126 Clacu08g1131 . Cre08g0914 Lsi08g00824 . Chy03g00646 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008574 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00887 Car_Chr05 FPKM 29.877317 33.101437 57.70536 55.898823 37.470284 39.21962 32.334141 58.893574 59.085201 54.851231