Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00890 ATGCATAACCCCGAGGAGGAAAATTGTGATGGTGCTCGCAAGAGAAGTTTCAATGATATGAAGTCCAGTGTTACTTCTGATAAGACCAATTTCGATAAACCCATGGACGAGGGCTTCATTCCTAGAAGGTATCAAATGGAGGTTTTCGAAGTTGGGATGAAGAGAAACACCATAGCCGTGTTGGAAACAGGTGCTGGAAAGACTATGATTGCAGTGATGCTTATAAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCCACTGTTCATTTGGTTCACCAGCAATTTAACGTTATTAAAGTTCAGACTGATTTTGAAGTGGCGGAGTATTATGGTGCCATGGGGGTCGATGATTGGAATATGAACTGCTGGGAGAAGGAAACAAGTGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTGAGGAAGGCATATTTTAGACTGGGAACAGTGTGCTTGATGATCATGGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTGTTTCCTCTTCCTTGGATTGTGAATGCCAAATAGGGGAGCTTGAAAGTATCTTGGATTCCAAGATTTATGCTATTGAAGACAAGAAAGAAGTGGAAATATATGTTCCCTCTGCAAAGGAAACATGCATATTTTATGAACCGGCTAAGTCCCTAACTTTGGAGTTGAAGGCAAAGATAGAAGCCCTGTGGTCCAAGTTCGATACTTCATTGTCAAACTCACAAGTGGCATTGCAAGTTCATTATAAAGATGTAGACAGTAAGCTTAAGGCACTGAAAAAACGGCTATCAAGTGATCATTTTAAGATCTCTTATTGCCTTGACGAACTTGGTGTTCTGTGTGCTTATGAGGCAATTAAAGTTTTATTAGAGAATGTCAATATTCCAAACAACGAATATGAGCTTTCTAGAGAAAGTTCTTTGCAGTATAAACAGTTTCTTGAGGAAGCATTACGAGTAATTGGGGAATCATTCCCACTTGGAAATGAAAATATACCAAATTTTGGTTTTGACTTTCAGAAAGCTGTAGATTTGGGATACATTTCTCCTAAATTGTTTGAACTTCTCCAACTTTTTGAATCATTTGGAGTATCTAGGCAGGTGCTCTGTCTCATATTTGTTGAAAGAATAATTGCCGCTAATGTTATTGAAAGATTTGTGAAAAAAGTAGCAAATTTATCTCATTTTACGGTTTCATATGTGACTGGATGTAATACATCAGTTGGTGCACTGGCACCGAAAGTCCAGAAGGAGACATTGGAGTTGTTTCGTCATGGCAAGGTCAATCTATTATTTTCCACTGATGTAGTTGAGGAGGGACTTCATGTACCAAATTGCTCATTTGTGGTACGGTTTGACCTTCCTAAGACTGTTCGTAGTTATGTACAATCTCGAGGTCGTGCTCGACAGAGCAACTCCCAATATATTTTGTTGCTGGAGAGGGGAAATGTAAAGCAAAGAGAACAACTATTTGATGTCATAAGAAGTGACCGATCAATGACAGAGGCAGCTATGAGTAGAGACCCTGATGCTTGCATGTTGAAGCCTTTTTCAATTATGGAGACAGATTCTTACATTGTGGAGGCAACTGGGGCATCAGTTACTGCAGATTATAGTGTTGGTCTCATACATCAATACTGTAAAAAGCTCCCTGGTGATAAATATTTCAGTCCAAAACCAATCTTTCAACTCTCATATTGTGAAGGATCCTATGAGTGTCGGCTAATTTTACCTCCTACAGCCGCTTTTCAAACCATAGTTGGTCCTTCAACTAGGAATTCTAATTTGTCTAAGCAGCTTGTATGCTTGGAGGCATGTAAGAAGCTTCATCAAATGGGTGCACTTAATGACCATCTTCTCCCCTCTATTGAAGAGATATCAGAATTTGACATGGGTCTGAAATGCAATGCATCCACTTCTGGAGCAGGAACTACAAAAAGAAAGGAACTGCACGGCAGAACTGCGATTAGAGCCTTGTCTGGAACTTGGGGAGAAAAGGTTGAAGGGGCCACTTTTCAGGCTTATAAATTTGACTTCTCCTGCAGTGTTATATATGAGCATTTTTCTGGATTTGTTCTTCTGTTAGAATCAAAACTTGATGATGACGTGGGAAATTTCGAACTTGAACTTTATTTAATCTCAAAGATGGTTAAGGCTTCTGTATCTTTTGCTGGGCAAGTTCATTTGGATGCTGAACAGATAATGAAAGCAAAGTGCTTTCAGGAGCTTTTTTTCAATGGATTGTTTGGGAGACTGTTAATTGGGTCAAAATTAACTGGAAAAAAGAGGGATTTTTTACTTCAGAAAGATACAAAACCTCTTTGGATTACATCAAACATGTATCTGCTTCTACCAGTAGATTCGCCCGATGCATCAAGTGATGATATATGGAAAATACACTGGAGAGCAATTGATTCTTGTGTTTCTGTGGTTGAGTTTTTGAAGAAAAACTCATCTTTGGATGCTGAAAGAAATTGTGGTGCTACATCAGATTCATCACCTTCTAGAAACTGCTCTGCCGAAACTGAAAGCAATGCTGCAAGTTTAATTCACTTTGCAAATTGTGTGCTAGATGTTCACTCCTTAAAGGACAGGGTGGTATTGGCTATTCATACTGGAAAGATCTACTCAATCGTTGAAGTTGTGAATAATTCATCTGCTGAGAGCCCTTTTGATGGCAACAGTGACAAAGCACCACCTGATTACATTACCTTTGCGGACTACTTCAATAAAAGGTACGGGATTATGCTAAGTTACCCACAACAGCCTCTGTTGCGTTTAAAACAAAGTCATAACCCTCACAATCTACTTGTCAACTTCAAGGATGAAGGTGTTACTAGTGATAAGTTGCAATCTGGCTCTGCTTTCAGAAAGCCACAAATGCATGTCCATATGCCTCCTGAACTTGTGCTTAGCATGGATGTCCCAAAGGGGGTTTTGAAGTCTTCATACTTGCTACCATCTTTGATGCACCGTTTTGAATCGTTGATGTTAGCTAGCCAGCTTAGGAAGGAGATTAATTATCATTCGAACAGCCTCTGTATATCTAGCTCTTTGATTTTGGAAGCACTTACAACCCTTGGAAGTTGTGAGAGTTTTTCCTTTGAGCGGTTGGAATTGCTTGGAGATTCAGTATTGAAGTATGCTGTGAGCTGCCATCTCTTTCTCAAGTTCCCTGAAAAACATGAAGGACAGTTATCTTCTCGGCGTCAACAGGTTATCTGTAATGCAACCTTACATGCTCTGGGAACGAAGTGCAAGTTACAGGGATACATTCGTGATTCTGCATTTGATCCACGTCGTTGGGTGGCACCAGGACATTGTACTCTTCGTCCTGTTCCTTGTAAATGTGGAGTGGATACAGCAGAGGTTCCTTTGGATGACAAGTTCTGCTCTGAAGATCCAAAAGTTGTTTTGGGTAAGTGCTGTGATAAGGGTCATAGGTGGTTGGTTTCAAAAACTATAGCCGACTGTGCTGAAGCCCTTATAGGCGCCTATTATGTTGATGGTGGAATCATTGCTGCACTTCATGTGATTAAGTGGCTTGGAATTGATGCTGATCTTGACGTAGCATTAGTTGTTGATGCAATTGCTTCTGCATCTTTGAGATCCTGCAATTTGAAAGATACTGAGATCGCAACCTTAGAGTCGAAAATTGGATATGAATTTGCTGTCAAAGGATTATTGCTGGAGGCTATAACACACACATCTGATCAAGGACTTGGTGTTAATTACTGTTACCAGAGGCTTGAGTTTCTTGGTGACTCAGTGTTAGACTTGCTCATTACATGGTATTATTATCAGAAGTACTCGGATATTGACCCAGGGGAGTTGACTGATTTACGTTCAGCTTCTGTTAATAATGAAACTTTTGCTCAAGTGGCTGTGAGACGGAATCTTCAGCAACATCTTCAACATTGTTCTGGGCTTCTGATTAGTCAAATTTCTGAGTATGTGAAGTACTTGTCCGAGTCTCATGATGCTGGAAAGTCACTGCATGGAAATAAAGGCCCAAAGGTTCTTGGTGATATGGTGGAAAGTATTGCGGGTGCCATACTGATTGACACAAAGCTTAATCTTGACGAAGTATGGAAAATATATAAGCCACTATTAACTCCATTAGTGACCCCTGATAAACTTGAACTTCCACCACTCCGAGAACTAATTGAATTATGTGATTCTCTGGGGTATTTCATCAAAGATAAATGTACTAGGAAGGGAGAAATTTTTCATGCAGAACTTAGATTACAGTTGCAAGATGTCCTATTAGTAGGTGAAGGATATGAACGAACCAGAAAAGCCTCAAGAGGAGAAGCTGCTCAACGCATATTAGTTCAACTTGAGACCAGAGGAATTTCTTACTCTCGTTCTGGCTCCAAGAAGAGAAAACAAAATCCCAGTTGCGTTGAGGCTGCTATGGTTTTCTCATCATCTATCAACTGTTCTACAGATGCCTGTGATCCCAACTCCGAGACCCCTGTTATTGGACCAATCAACTTGAAGAAAGGAGGACCACGGAGTACTTTGTTTGAACTATGCAAGAAACTGCAGTGGCCAATGCCAACTTTCAATACAGTAGAAAATAAATCAAGAGTCCTAATAGACATTGGTGAAGGCTCGGAGAGAAGAAAAGGATTTAACAGTTACTTGTCAAGTATTATTCTGCAAATACCCAATGCTGGCTGTATTGAATGTAAAGGTGATGCCCGAGCCGATAAGAAGAGCTCGCTTGACTCAGCATCTCTCGTCATGCTTGAGGAACTCCGACAACGAGGAAGAGTCGTTATTAATGACTCATGA 4926 40.19 MHNPEEENCDGARKRSFNDMKSSVTSDKTNFDKPMDEGFIPRRYQMEVFEVGMKRNTIAVLETGAGKTMIAVMLIKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVQTDFEVAEYYGAMGVDDWNMNCWEKETSERDVLVMTPQILLDALRKAYFRLGTVCLMIMDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKGVSSSLDCECQIGELESILDSKIYAIEDKKEVEIYVPSAKETCIFYEPAKSLTLELKAKIEALWSKFDTSLSNSQVALQVHYKDVDSKLKALKKRLSSDHFKISYCLDELGVLCAYEAIKVLLENVNIPNNEYELSRESSLQYKQFLEEALRVIGESFPLGNENIPNFGFDFQKAVDLGYISPKLFELLQLFESFGVSRQVLCLIFVERIIAANVIERFVKKVANLSHFTVSYVTGCNTSVGALAPKVQKETLELFRHGKVNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQSNSQYILLLERGNVKQREQLFDVIRSDRSMTEAAMSRDPDACMLKPFSIMETDSYIVEATGASVTADYSVGLIHQYCKKLPGDKYFSPKPIFQLSYCEGSYECRLILPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHQMGALNDHLLPSIEEISEFDMGLKCNASTSGAGTTKRKELHGRTAIRALSGTWGEKVEGATFQAYKFDFSCSVIYEHFSGFVLLLESKLDDDVGNFELELYLISKMVKASVSFAGQVHLDAEQIMKAKCFQELFFNGLFGRLLIGSKLTGKKRDFLLQKDTKPLWITSNMYLLLPVDSPDASSDDIWKIHWRAIDSCVSVVEFLKKNSSLDAERNCGATSDSSPSRNCSAETESNAASLIHFANCVLDVHSLKDRVVLAIHTGKIYSIVEVVNNSSAESPFDGNSDKAPPDYITFADYFNKRYGIMLSYPQQPLLRLKQSHNPHNLLVNFKDEGVTSDKLQSGSAFRKPQMHVHMPPELVLSMDVPKGVLKSSYLLPSLMHRFESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCESFSFERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCKLQGYIRDSAFDPRRWVAPGHCTLRPVPCKCGVDTAEVPLDDKFCSEDPKVVLGKCCDKGHRWLVSKTIADCAEALIGAYYVDGGIIAALHVIKWLGIDADLDVALVVDAIASASLRSCNLKDTEIATLESKIGYEFAVKGLLLEAITHTSDQGLGVNYCYQRLEFLGDSVLDLLITWYYYQKYSDIDPGELTDLRSASVNNETFAQVAVRRNLQQHLQHCSGLLISQISEYVKYLSESHDAGKSLHGNKGPKVLGDMVESIAGAILIDTKLNLDEVWKIYKPLLTPLVTPDKLELPPLRELIELCDSLGYFIKDKCTRKGEIFHAELRLQLQDVLLVGEGYERTRKASRGEAAQRILVQLETRGISYSRSGSKKRKQNPSCVEAAMVFSSSINCSTDACDPNSETPVIGPINLKKGGPRSTLFELCKKLQWPMPTFNTVENKSRVLIDIGEGSERRKGFNSYLSSIILQIPNAGCIECKGDARADKKSSLDSASLVMLEELRQRGRVVINDS 1641
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8674561 8691127 - Carg27026-RA Car05g00890 149276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00890 1641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 396 548 IPR001650 -
Car05g00890 1641 ProSitePatterns Ribonuclease III family signature. 1290 1298 IPR000999 GO:0004525|GO:0006396
Car05g00890 1641 ProSiteProfiles Ribonuclease III family domain profile. 1041 1213 IPR000999 GO:0004525|GO:0006396
Car05g00890 1641 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891
Car05g00890 1641 Pfam Ribonuclease III domain 1078 1213 IPR000999 GO:0004525|GO:0006396
Car05g00890 1641 Pfam Ribonuclease III domain 1290 1398 IPR000999 GO:0004525|GO:0006396
Car05g00890 1641 Pfam Helicase conserved C-terminal domain 408 510 IPR001650 -
Car05g00890 1641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 205 IPR014001 -
Car05g00890 1641 ProSiteProfiles Ribonuclease III family domain profile. 1254 1399 IPR000999 GO:0004525|GO:0006396
Car05g00890 1641 Pfam DEAD/DEAH box helicase 43 204 IPR011545 GO:0003676|GO:0005524
Car05g00890 1641 ProSiteProfiles PAZ domain profile. 904 1016 IPR003100 GO:0005515
Car05g00890 1641 Pfam PAZ domain 903 1036 IPR003100 GO:0005515
Car05g00890 1641 Pfam Dicer dimerisation domain 581 665 - -
Car05g00890 1641 MobiDBLite consensus disorder prediction 1 21 - -
Car05g00890 1641 MobiDBLite consensus disorder prediction 1 34 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00890 K11592 DICER1, DCR1; endoribonuclease Dicer [EC:3.1.26.-] - csv:101205038 2869.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00838 Car-Chr2:6055917 Car05g00890 Car-Chr5:8674561 1.21E-104 dispersed
Car05g00890 Car-Chr5:8674561 Car10g00759 Car-Chr10:4011798 9.86E-74 dispersed
Car05g00890 Car-Chr5:8674561 Car10g00453 Car-Chr10:2275991 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00890 Car_Chr05 FPKM 10.237825 12.626248 13.011974 14.528211 23.521729 26.833887 23.969833 31.253153 29.088816 26.765646