Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00897 ATGGCAAACCAAGGAGCAAAGAAGCGCAAGGAAGAGAACGCTCGTCATATGGCGAATCTCCGTCGTCTCATCATAGCCTGTAACGTTATCTATATCTTGGTTCGAATGCTGATTTTTCATTCAAGTTTCACTTGGAAACACTGGGTTGGTCTGATTGTCACATCCGCAGCTTATTTTATTCCTTACAACCAACTTGCCAAAATGGCAGACCCAACATATGGTGATGACGGTGAACTTCTAGATGGTGGGTTTGATATGAGTACTGGTGGAATTTGTGGCTACATGCATGACGTGATCTACATTACGAGCTTTGTGCAAATAATGTCAATCCTCTCTGGGAAGTTTTGGTACACCTACCTTGTGATTCCAGCATTTGGGGTATACAAATCTTCTGGTTTAATTAAGAGTTTATTGTCGCACGGTTCAGAGGATGAACCTGAGGATGAGAAGACTCGCAAGAAGAGGGAAAAGATGGAGAAGAAAGCTTCAAGAGTGAAGTTTATGAAAACCAAGAATAGATAA 522 41.76 MANQGAKKRKEENARHMANLRRLIIACNVIYILVRMLIFHSSFTWKHWVGLIVTSAAYFIPYNQLAKMADPTYGDDGELLDGGFDMSTGGICGYMHDVIYITSFVQIMSILSGKFWYTYLVIPAFGVYKSSGLIKSLLSHGSEDEPEDEKTRKKREKMEKKASRVKFMKTKNR 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8744271 8748333 + Carg11953-RA Car05g00897 149283

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00897 173 MobiDBLite consensus disorder prediction 140 165 - -
Car05g00897 173 Pfam SRP-independent targeting protein 2/TMEM208 1 162 IPR008506 -
Car05g00897 173 PANTHER TRANSMEMBRANE PROTEIN 208 1 172 IPR008506 -
Car05g00897 173 PANTHER BNAA01G06570D PROTEIN 1 172 - -
Car05g00897 173 MobiDBLite consensus disorder prediction 139 173 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00897 - - - csv:101215368 300.827
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car12g00746 Car-Chr12:7205425 Car05g00897 Car-Chr5:8744271 6.53E-113 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004226 1 1 1 2 2 1 2 0 1 1 1 1 2 2 1 2 1 2 2 0 1 1 1 1 1 1 0 4 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00897 Car_Chr05 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0