Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00943 ATGGATGAGTTTTACAGGCTTAACAACCCTGTCATGTCCTCTTATTCTAATGGTGTTCTTGGAGGTGAAGCCATTGCTAGCACCAGCTGTGGTGATATTCATGAAGCTCTAATGGTGGATGATGAACTGCTTCACCTTGAAGCAGAGCCCACCACTGGCTTGAACATGTCTGACATGATCAAGACTCAGATTATCAACCATCCCCTTTACCCCAAATTGGTTTCTGCTTACATTGAATGCCAAAAAGTTGGAGCTCCACCACAAGTGGCTTCTCTTCTTGAAGAAATTGGCCGTGAAAATCATCCTTCTAGATCTTGTATTGAGTTGGGAGCTGATCCTCAACTAGACAACTTTATGAATGAGCTATCCAAGCCATTTGATGAAGCAGCCATGTTCTTGACCAACATTGAATTGGAGCTAAGCAACCTGTGTAAAGGATCGTTTACTGCAACGTCCGAATCTCGCTCCGCCATTAACGACCTCAAAGAAATGCTGCTAAAGAAGTACAGTGGGTATCTAAGCAGTTTGAAGAAGGAATTCTTGAAGAAGAGGAAAAAGGAGAAGCTGCCAAAGGATGCAAGAATGGCTCTACTTGAGTGGTGGAGTACTCATTATAAATGGCCTTATCCTACAGAAGAGGAAAAATCAAAACTCTCTGTTATCACTGGTTTGGATCAAAAGCAGATCAATAACTGGTTCATAAACCAGAGAAAGCGGCATTGGAAGCCGCCCGAAGATATGCGGTTCATGCTCATGGACGGGGCCGGGGTCGGGGACGGGGACGGGGAATGCATCAAAGGATTGAATCAGGCCATATAA 819 44.44 MDEFYRLNNPVMSSYSNGVLGGEAIASTSCGDIHEALMVDDELLHLEAEPTTGLNMSDMIKTQIINHPLYPKLVSAYIECQKVGAPPQVASLLEEIGRENHPSRSCIELGADPQLDNFMNELSKPFDEAAMFLTNIELELSNLCKGSFTATSESRSAINDLKEMLLKKYSGYLSSLKKEFLKKRKKEKLPKDARMALLEWWSTHYKWPYPTEEEKSKLSVITGLDQKQINNWFINQRKRHWKPPEDMRFMLMDGAGVGDGDGECIKGLNQAI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9102169 9106063 + Carg12000-RA Car05g00943 149329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00943 272 Pfam KNOX2 domain 110 144 IPR005541 GO:0003677|GO:0005634
Car05g00943 272 Pfam Homeobox KN domain 200 239 IPR008422 GO:0003677|GO:0006355
Car05g00943 272 Pfam ELK domain 160 181 IPR005539 GO:0003677
Car05g00943 272 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Car05g00943 272 ProSiteProfiles ELK domain profile. 160 180 IPR005539 GO:0003677
Car05g00943 272 Pfam KNOX1 domain 60 101 IPR005540 GO:0003677|GO:0005634
Car05g00943 272 ProSiteProfiles 'Homeobox' domain profile. 180 243 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00943 Car12g00981 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00943 Car-Chr5:9102169 Car05g00025 Car-Chr5:135513 1.36E-69 dispersed
Car12g00981 Car-Chr12:9897209 Car05g00943 Car-Chr5:9102169 2.48E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3591 PF03790 KNOX1 6.80E-21 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00943 - - csv:101203403 437.958