Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00958 ATGGCGTCGAGGAATCGGACTTTGATTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCGGCTCTTCGCCTGCTTCTGCATCTCCATCGACTAGCTCTGGCACTGGTGGACCGGTGATTGAATTGGTTAGCTCGTCGTTGTTGCATCCGAATCGGTCATACGCTCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACTGTGGGTCTACCTCCGGCTTGGGTGGATGTATCCGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTAAAGATGATGGAGTTAGCTAAAGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGATGATAAAGAAGATCAACGGTTAATTGAATCTCTCACGCAAGACATAACTAACTTAATCAAGAAATCGGAGAAGGGGCTCAAGAGATTTTCCGTAGCTGGACCTTCGGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCCATGGAGCTTCGCAAGAAACAATCAACTTATTTAAAGCGCCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAACAGGTCGAGAATGGAGGAGGACGATGATTTAGAAGACATGGTATTTAACGAGCATCAGATGGCTAAGGTGCGAAAGACTGAAGCATTCACTGCAGAAAGAGAGAGAGAGATCCAACAAGTAGTAGAATCCGTGAACGAGCTCGCTCAGATCATGAAGGATCTATCAGTACTCGTCATAGACCAGGGTACCATTATCGATAGAATAGATTACAATATCCAAAATGTTGCGACGACGGTCGAGGAGGGCCTTAAGCAACTGCAGAAGGCGGAGAGAACACAGAAACAAGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTCGTCATGTTGGTTCTCTTAATCCTTAAATCCATCCTATTTTGA 993 45.62 MASRNRTLIFRKYRDALRSVRVPTGSSPASASPSTSSGTGGPVIELVSSSLLHPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMMELAKAHAKALMPSFGDDKEDQRLIESLTQDITNLIKKSEKGLKRFSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEEDDDLEDMVFNEHQMAKVRKTEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKSILF 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9180189 9183619 - Carg12016-RA Car05g00958 149344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00958 330 MobiDBLite consensus disorder prediction 21 44 - -
Car05g00958 330 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 234 296 IPR000727 -
Car05g00958 330 MobiDBLite consensus disorder prediction 23 44 - -
Car05g00958 330 Pfam SNARE domain 270 322 IPR000727 -
Car05g00958 330 ProSitePatterns Syntaxin / epimorphin family signature. 240 279 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g00958 Car12g01004 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00958 Car-Chr5:9180189 Car06g00569 Car-Chr6:3253771 7.49E-11 dispersed
Car17g01008 Car-Chr17:8021846 Car05g00958 Car-Chr5:9180189 5.56E-148 transposed
Car12g01004 Car-Chr12:10021081 Car05g00958 Car-Chr5:9180189 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00958 K08489 - csv:101207998 578.17