Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00963 ATGTCGACGGAGAGATTGATTTCCAGTGGTACAACTCCGTCGGAAGCAGAGCCGCCGAGGTTGGCTTCATCGTCGCATTCGTTCCGGCAATGTGGAGAACCAGCTAGGGTTTTTGAGGAGCTTCCGATTGCTTCCATTGTATCGGTTTCGCGACCGGATACTGGAGATATCAGTCCCTTGCTGTTGTCTTACACCATTGAAATTCAATACAAACAGTTTAAATGGAGCTTAGTGAAGAAAGCCTCTCAAGTTCTATATTTACATTTTGCGCTGAAGAGACGTGCATTTATTGAAGAACTTCACGAGAAACAAGAGCAGGTTAAAGAATGGCTTCACAACTTGGGAATAGTAGACCATACAGCTGCAGTCCATCATGATGACGAGTCTGATGATGGGAATGTCCCTTCTGTTGCTGCTTTACCCATCATTAAGCCAGCAATGGGAGGACAGCGGTCCATTTCAGACAAGGCAAAGCTAGCAATGCAGGGTTACTTAAATCACTTCTTTGGGAACTTGGATATTGTAAATACTCGTGAGGTCTGCAAATTTTTAGAAGTCTCGAAGATGTCATTTGTAAGAGAACACGGTCCGAAGTTGAAAGAAGGTTACCTAATGGTGAAGCATTTGAAACAGCTAACAGGATCTGATTCTAGTATAAAATGTTTTGCATGTCATTGTTGCAGTTGCTGCGTGTACAATTGGAAAAAGGTTTGGGCTGTTTTGAAACCAGGTTTCTTGGCCTTGGTTGCTGATCCCATGGACACTAAACTCCTAGATATAATTGTTTTTGATGTTCTACCAACATTAGAAGAAAAGGAGGGATCCCAAGCATGCTTAGCATATCATGTCAAGGAGCGCAATCCTTTACGTTATTCATTTAAGGTTAGAGGCGGAAATGGAAATCTGAGGTTCAGAACCACAAGTACCGCCAAAGTCAAAAAATGGGTCTCAGCAATTAATGATGCTGGGTTTGGATCCAAAGATGGTTGGTGCCACCCTCATCGCTTTGGTTCTTTTGCTCCTCAGAGAGGTTTGAGTGATGATGAAAGCCAAGCTCAGTGGTTCATAGATGGCCGGGCAGCTTTTGAAGCAATCGCTTGTTCTATTGAGGCTGCAAAATCTGAGATATTCATCACTGGTTGGTGGCTTTGCCCTGAGCTTTATATGCGACGTCCTTTTCACAATCATTCTTCTTCACGGCTTGATGCATTGCTGGAAACAAAGGCAAAAGAAGGTGTCAAGATTTACATCTTAATGTATAAAGAGGTCCCTATTGCTCTGAAAATTAACAGTAGGTATAGTAAGAAGAGGCTTCTAAATATTCATGAGAATATTAAGGTACTACGTTCTCCTGATCATATGTCACATCATGAAAAACTTGTCATCGTTGATCACCACATTTGCTTCATTGGAGGTTTGGATTTGTGCTTTGGCCGCTATGATACAATGGAACATAAAGTGAGTGATTTCCCTCCTTATACATGGCCAGGAAAGGACTATTACAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGACACAATGAGTGATGAATTGGAGCGGGAGAAGTGTCCTCGAATGCCATGGCATGATGTTCACTGTGCTCTTTGGGGATCTCCATGCCGTGATATTGCTCGTCACTTTGTTCAGAGGTGGAACCATGCCAAGAGAGATAAAGCCCCAAATGAAGAAAAAATACCTCTATTAATGCCTCAACATGACATGGTCCTTCCACATTACATGGGAAGAAGCACGGAGTTGAGTGTAAAAAATAAAGGCTCAGAGCAAGATCATCAAAAGCAGAACACGGAAGATTTCTTTTTCTCCTCATCACCACAGGAAGATATTCCATTACTTATGCCTCAGGACGTTGGTGGACTTCCAGATTCTAACATACAAAGAAATAGTCAAATGAACAAGCAAATGGAGATACAAAGTAGTGCTATGGATTCTTTCCAGGCATACAATGTTGAATCATCGACCCAATATGAACAAGCAAATGGCTTGTTCGATGAATTTGGATTTTTGGATGAGTTTGGTGATTTTGGTCTTTCGAGGGCAGCTACTACTGATACTCCGCCATATATGAAAACTTCAGATGATTGGTTGGAAACTGTACATGAAAGCAATCATGTTGTTGCTGTAAACGAGGTCAAAGAAATCGGTCCTCTTACTACCACCAATTGTCAGGTAATAAGAAGTGTCAGCCAGTGGTCAGCAGGAACAAGCAAACCAGAAGCAAGCATCCATGCTGCTTATTGTTCTGCCATTCAAGAGGCAAAACACTTCATCTACATTGAGAACCAGTTTTTCATATCGGGTTTATCAGGGGATGAGACCATCCAAAATCGGATTCTGGAAGCACTATACCAACGTATATGGCTGGCTCATAAAGAAAAACAATGTTTTAGAGTTATTATTGTTTTACCACTCTTACCTGGATTTCAGGGTGGTGTAGATGATAATGGTGCAGCAACGGTTCGAGCCTTGATGCATTGGCAGTATCGAACAATTAGTTGGGAAAAAACTTCGATATTGTACCGTCTCAATCTTTTACTGGGTTCTAAAACACAGGATTATATCTTGTTTTGTGGCCTCCGATCATATGGCAGACTTTTTGATGGTGGTCCAATTGCCACTAGTCAGGTGTATGTGCACAGCAAATTGATGATAATCGATGACTGCATTACCTTTATTGGTTCCTCCAACATTAACGACAGAAGTTTACTTGGATCCAGAGATTCTGAGATTGGGGTGATCATCGAGGATAAAGAGTTTGTTGATTCATATATGAATGGAAAGCCATGGAAGGCTGGAAAATTCGCTCATAGTCTACGATGCTCCTTGTGGTGTGAGCACCTTGGTCTTCATCTCGGAGAGGTCAGTCAAATCCTTGATCCTATAGTAGAAGCAACATACAAAGATTTATGGATAGCTACGGCAAAGTGCAAACTTGATCATAACACACTAGATTTAGGAATAGCTGCTGAGAAGATAGAAAAGCATGAAAATGGGGAAGTAAAGATGATAGATCTCAGACCAATGGAGAAACTGAAGTGTATTAGAGGACATCTTGTCTGTTTTCCATTGAAGTTCTTGTGGCAAGAAGATCTCAGACCAGGCTTCATTGAGAGTGAGTTTTATGCTGCCCCTCAAGTTTTTCATTGA 3168 41.57 MSTERLISSGTTPSEAEPPRLASSSHSFRQCGEPARVFEELPIASIVSVSRPDTGDISPLLLSYTIEIQYKQFKWSLVKKASQVLYLHFALKRRAFIEELHEKQEQVKEWLHNLGIVDHTAAVHHDDESDDGNVPSVAALPIIKPAMGGQRSISDKAKLAMQGYLNHFFGNLDIVNTREVCKFLEVSKMSFVREHGPKLKEGYLMVKHLKQLTGSDSSIKCFACHCCSCCVYNWKKVWAVLKPGFLALVADPMDTKLLDIIVFDVLPTLEEKEGSQACLAYHVKERNPLRYSFKVRGGNGNLRFRTTSTAKVKKWVSAINDAGFGSKDGWCHPHRFGSFAPQRGLSDDESQAQWFIDGRAAFEAIACSIEAAKSEIFITGWWLCPELYMRRPFHNHSSSRLDALLETKAKEGVKIYILMYKEVPIALKINSRYSKKRLLNIHENIKVLRSPDHMSHHEKLVIVDHHICFIGGLDLCFGRYDTMEHKVSDFPPYTWPGKDYYNPRESEPNSWEDTMSDELEREKCPRMPWHDVHCALWGSPCRDIARHFVQRWNHAKRDKAPNEEKIPLLMPQHDMVLPHYMGRSTELSVKNKGSEQDHQKQNTEDFFFSSSPQEDIPLLMPQDVGGLPDSNIQRNSQMNKQMEIQSSAMDSFQAYNVESSTQYEQANGLFDEFGFLDEFGDFGLSRAATTDTPPYMKTSDDWLETVHESNHVVAVNEVKEIGPLTTTNCQVIRSVSQWSAGTSKPEASIHAAYCSAIQEAKHFIYIENQFFISGLSGDETIQNRILEALYQRIWLAHKEKQCFRVIIVLPLLPGFQGGVDDNGAATVRALMHWQYRTISWEKTSILYRLNLLLGSKTQDYILFCGLRSYGRLFDGGPIATSQVYVHSKLMIIDDCITFIGSSNINDRSLLGSRDSEIGVIIEDKEFVDSYMNGKPWKAGKFAHSLRCSLWCEHLGLHLGEVSQILDPIVEATYKDLWIATAKCKLDHNTLDLGIAAEKIEKHENGEVKMIDLRPMEKLKCIRGHLVCFPLKFLWQEDLRPGFIESEFYAAPQVFH 1055
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9219198 9228322 - Carg12021-RA Car05g00963 149349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00963 1055 Pfam Phospholipase D Active site motif 455 479 IPR001736 GO:0003824
Car05g00963 1055 MobiDBLite consensus disorder prediction 1 27 - -
Car05g00963 1055 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 452 479 IPR001736 GO:0003824
Car05g00963 1055 Pfam PLD-like domain 755 930 IPR025202 -
Car05g00963 1055 ProSiteProfiles PH domain profile. 197 324 IPR001849 -
Car05g00963 1055 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 881 908 IPR001736 GO:0003824
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00963 Car-Chr5:9219198 Car01g00054 Car-Chr1:297088 1.44E-15 dispersed
Car17g00315 Car-Chr17:1962053 Car05g00963 Car-Chr5:9219198 0 wgd
Car05g00963 Car-Chr5:9219198 Car08g01119 Car-Chr8:7572827 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00963 K01115 - csv:101220522 1934.07