Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00970 ATGGTTAAGTTAAGCACCGTAAAGCTCAAGAAATTTGGCAGCGATTGCAATAATCATGGATGTCTTCCAAAACACGACAACCTTAGTTTGAGCCTTGGATTGAGCTTTGATTCTCATTATTTGCAGCTCAATCTCCGGCCTTCTTGGAATGATCATGCCTCATCAGATCGGACATCGGAAAACAGGACGCCGCCATCGCCGGTGGATTGCGAGGAGGAGGAGGAGGAGGCGGCGGTGTCGAGTCCTAACAGTACGGTTTCGACTGTAAGTGGGAAGAGGAGTGAACCAGAGACCAACAACGGCGAGGATCTTGACGGCGATGAAGAAGACGCTGAAACTTCTAGAAAAAAGCTTCGTCTCACTAAAGATCAATCCGCCGTCTTGGAAGACAGCTTCAAAGAACACAACACTCTCAATCCGAAGCAAAAGTTAGCGTTGGCTAAACAATTGGGTCTCCGGCCACGACAAGTCGAAGTCTGGTTCCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAAACGGAAGTTGACTGTGAGTTTCTAAAGAGATGCTGTGAGAATCTAACGGAGGAGAACAGGCGGTTGCAAAAAGAAGTTCAGGAACTGAGAGCACTGAAACTTTCCCCTCAGTTCTACATGCACATGGCCCCACCCACCACCCTCACCATGTGCCCGTCATGTGAGCGCGTGGCGGTCCCATCCTCCACGTCGGCTCCACTTAACGTAACGAGAATGGGCCCGGCTCAAGCCCAAGCCCCAAGCCCAATCCAAGGCCCTTCACTCTCGGCCTATCCATGTCAACCCGTGGGCCTCCGCCATCCCGGCCCGGCCCTTTAA 834 51.56 MVKLSTVKLKKFGSDCNNHGCLPKHDNLSLSLGLSFDSHYLQLNLRPSWNDHASSDRTSENRTPPSPVDCEEEEEEAAVSSPNSTVSTVSGKRSEPETNNGEDLDGDEEDAETSRKKLRLTKDQSAVLEDSFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMAPPTTLTMCPSCERVAVPSSTSAPLNVTRMGPAQAQAPSPIQGPSLSAYPCQPVGLRHPGPAL 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9261036 9262392 + Carg12028-RA Car05g00970 149356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00970 277 Pfam HD-ZIP protein N terminus 61 97 IPR006712 GO:0005634
Car05g00970 277 Pfam Homeodomain 115 169 IPR001356 GO:0003677
Car05g00970 277 MobiDBLite consensus disorder prediction 240 260 - -
Car05g00970 277 ProSitePatterns 'Homeobox' domain signature. 146 169 IPR017970 GO:0000981|GO:0006355
Car05g00970 277 MobiDBLite consensus disorder prediction 51 118 - -
Car05g00970 277 MobiDBLite consensus disorder prediction 79 95 - -
Car05g00970 277 Pfam Homeobox associated leucine zipper 171 205 IPR003106 GO:0006355|GO:0043565
Car05g00970 277 ProSiteProfiles 'Homeobox' domain profile. 111 171 IPR001356 GO:0003677
Car05g00970 277 Coils Coil 170 207 - -
Car05g00970 277 MobiDBLite consensus disorder prediction 240 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00970 Car-Chr5:9261036 Car12g00635 Car-Chr12:4282596 1.35E-80 dispersed
Car16g01059 Car-Chr16:9103007 Car05g00970 Car-Chr5:9261036 9.35E-133 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3592 PF00046 Homeodomain 7.90E-17 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00970 K09338 - csv:101223208 328.561