Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00972 ATGCATATTGAGGAATTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAAGTTCAGGTGCTATTGTAAGTAATTTGGAGGACCAGAGCGTTATTAGGTCTGATGTTAAAAGGATTGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGCGTTGGAGGAGTGATAACACTGAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATTATGACATTGATCATCTGACCATTCCAACTAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTACAAATTTCATCCACAAAAATGCATCGCACGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAACACGTGAAGTCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACATGATTGTTCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGAAAGTATCTGGATCATCACACGATCTTATCACATTTGATGATAGTTCTGTAGTTGTTGTAAAAGGATCTGATCTCGAAGGATATGACCCAAGTATCAGCCAAAGTGAAATGGGCTATATCTGGGCAGATTTAAATGTGGTATGCAGAGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCCTGTTTGTGGCTCAGCTATCGAGAAAAACACCATAGCAAGAAAATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTCAGTGCTGCTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1002 43.41 MHIEELKEGELQSGEEGSSGAIVSNLEDQSVIRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVGGVITLNEPYETLVPSTLYRDYDIDHLTIPTRDYCFAPLLSDICIATNFIHKNASHGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHMIVQKDVSFCHIDDLGKKVSGSSHDLITFDDSSVVVVKGSDLEGYDPSISQSEMGYIWADLNVVCRVRVAGQAALTRISCLWLSYREKHHSKKISGDDLGVGKGCSLSAAHLEGFSVDIHVY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9270867 9275766 + Carg12030-RA Car05g00972 149358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00972 333 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
Car05g00972 333 Pfam Dual specificity phosphatase, catalytic domain 112 210 IPR000340 GO:0008138|GO:0016311
Car05g00972 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 136 204 IPR000387 GO:0016311|GO:0016791
Car05g00972 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00972 Car-Chr5:9270867 Car12g01250 Car-Chr12:11791497 1.74E-98 dispersed
Car16g01057 Car-Chr16:9093168 Car05g00972 Car-Chr5:9270867 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00972 - - csv:101222975 592.423