Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00976 ATGATGTACGGACAGAGTAATAGCTCTGAATCGGATTTTGTTCTTCTCGAATCCATACGCCGCCATTTGTTGGTAGATTCTGATTCTCTCCGATGTGGGAATTTCGCCGTCGCCGGAGCCACCGCCCCTGTTTTCTGCCGGACCTCCAGTTTCGGAAGCTTGTACCCTTGTTTGACTGAAAAATGGGGTGCTCTGCCTCTCAGAGAGGATGATTCCGAGGACATGGTTCTCGCCGGAGTCCTCCACGACGCTGTCCAGTTCGGCTGGGTTCCCTCGCTCGGATCTTCCTTGCCGGAGACTTTCAATTTTGGTTTTTCCGATGTCAAGCCTGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTTATCGAGACGAAGGTGGCCGTGGCAGTGGCAGATCCGTTGCCGGCGGTTGTTCCTGCGAAGGGGAAGCATTACCGGGGAGTCAGGCAGCGGCCGTGGGGGAAATTTGCGGCGGAGATTCGTGATCCGGCGAAAAATGGAGCTCGGGTTTGGCTTGGGACATTTGAGACGGCGGAGGATGCAGCGTTGGCTTATGACCGAGCCGCTTATCGGATGCGCGGCTCTAAAGCTCTTCTTAATTTCCCGCTTCGAGTTAATTCTGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGTCCCGGTCGTCACCGGAGCCCACTTCTTCGTGTACGTCGGTGGAGAGTGGGTCCCCTAAGAGGCGGAAGAAGACAGACGGCACGACAATGCCGACGGCTCAAGCTGCGCCGGAGTCGATACAATTAGGAGAGGGGACCAATGCAATACAAGTGGAAACTGACGTGGCAATGTACACAAGTGGCGAGCAATGA 864 56.02 MMYGQSNSSESDFVLLESIRRHLLVDSDSLRCGNFAVAGATAPVFCRTSSFGSLYPCLTEKWGALPLREDDSEDMVLAGVLHDAVQFGWVPSLGSSLPETFNFGFSDVKPEPEILPPVNILPEVIETKVAVAVADPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSCTSVESGSPKRRKKTDGTTMPTAQAAPESIQLGEGTNAIQVETDVAMYTSGEQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9299388 9300251 + Carg12034-RA Car05g00976 149362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00976 287 MobiDBLite consensus disorder prediction 209 272 - -
Car05g00976 287 MobiDBLite consensus disorder prediction 216 240 - -
Car05g00976 287 MobiDBLite consensus disorder prediction 252 272 - -
Car05g00976 287 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Car05g00976 287 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g01327 Car-Chr2:8795070 Car05g00976 Car-Chr5:9299388 1.81E-90 dispersed
Car05g00976 Car-Chr5:9299388 Car16g01053 Car-Chr16:9067133 9.44E-136 dispersed
Car17g01253 Car-Chr17:9495205 Car05g00976 Car-Chr5:9299388 3.84E-29 dispersed
Car05g00975 Car-Chr5:9289512 Car05g00976 Car-Chr5:9299388 8.64E-31 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3594 PF00847 AP2 1.20E-14 CL0081 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00976 K09286 - csv:101203663 418.698