Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00985 AACAAAATTGAAACAGGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCACGATGGAGGACGAAGGGAAGTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTACGATGATAAAAGACTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATCGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCAATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCGTATTTCTCTGGATCTTCTGAGGAGGACTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGTCATGGAAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATCTCGGTTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAATCGGAGAAAGTGCAAGCGCTTGGGAATCATAACTCGCCTCTCTGTAATATCGATCTAACTGTCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAAGATCAACGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCGAAACGAGAAGACTGCAAGACGTTGAGTCGACTTGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAGTACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACAAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGCGTAGAAAGCAAGGAGCTCGTTGATGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATATGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1509 44.4 NKIETGTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISVDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTVILNFREFTKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDMRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9390367 9393659 + Carg12043-RA Car05g00985 149371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00985 502 Pfam Asx homology domain 265 358 IPR028020 -
Car05g00985 502 Pfam GATA zinc finger 5 33 IPR000679 GO:0006355|GO:0043565
Car05g00985 502 MobiDBLite consensus disorder prediction 95 150 - -
Car05g00985 502 MobiDBLite consensus disorder prediction 102 141 - -
Car05g00985 502 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 276 385 IPR044867 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00985 - - - cmo:103490848 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00985 Car-Chr5:9390367 Car19g00288 Car-Chr19:4332308 2.37E-99 dispersed
Car16g01046 Car-Chr16:8977876 Car05g00985 Car-Chr5:9390367 0 wgd
Car02g01335 Car-Chr2:8829645 Car05g00985 Car-Chr5:9390367 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car16g00679 . 59 336 C2C2-Gata Transcription Factor Family AT5G66320 51.4 1.3e-63 240.7
Car02g01335 . 1 511 C2C2-Gata Transcription Factor Family AT4G17570 52.2 3.1e-133 472.6
Car16g01046 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.0 7.7e-132 468.0
Car05g00985 . 5 481 C2C2-Gata Transcription Factor Family AT4G17570 52.9 1.6e-124 443.7
Car19g00289 . 47 170 C2C2-Gata Transcription Factor Family AT4G17570 66.1 1.2e-36 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3595 PF13919 ASXH 2.40E-08 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car05g00985 Car_Chr05 FPKM 5.343787 5.691114 9.658476 9.150154 4.36319 4.866457 6.7472 12.588867 11.13172 12.119561