Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g00985 AACAAAATTGAAACAGGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCACGATGGAGGACGAAGGGAAGTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTACGATGATAAAAGACTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATCGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCAATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGCAGTCGTATTTCTCTGGATCTTCTGAGGAGGACTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGTCATGGAAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATCTCGGTTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAATCGGAGAAAGTGCAAGCGCTTGGGAATCATAACTCGCCTCTCTGTAATATCGATCTAACTGTCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGAGTGAAGATCAACGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCGAAACGAGAAGACTGCAAGACGTTGAGTCGACTTGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAGTACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACAAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGCGTAGAAAGCAAGGAGCTCGTTGATGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATATGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1509 44.4 NKIETGTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQQSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISVDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTVILNFREFTKQLTSEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDMRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9390367 9393659 + Carg12043-RA Car05g00985 149371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g00985 502 Pfam Asx homology domain 265 358 IPR028020 -
Car05g00985 502 Pfam GATA zinc finger 5 33 IPR000679 GO:0006355|GO:0043565
Car05g00985 502 MobiDBLite consensus disorder prediction 95 150 - -
Car05g00985 502 MobiDBLite consensus disorder prediction 102 141 - -
Car05g00985 502 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 276 385 IPR044867 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00985 Car-Chr5:9390367 Car19g00288 Car-Chr19:4332308 2.37E-99 dispersed
Car16g01046 Car-Chr16:8977876 Car05g00985 Car-Chr5:9390367 0 wgd
Car02g01335 Car-Chr2:8829645 Car05g00985 Car-Chr5:9390367 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3595 PF13919 ASXH 2.40E-08 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g00985 - - cmo:103490848 827.78