Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01021 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCATCCCGCCGACAATCCCGACCTTCTCTTTTCCGCCTCCGACGCTCTCGACGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCCAATCGCTTCCTCTCTCCCACTCATTCCGATCGCTTTCTTTCCCCTTCTCACTCCCTACGCTTTTCCCCTCCTCACGAACCGTCGCTGGGGGCTAGGACTAGAACTGCGCCGCCCGAGACTGCCTTCAAGGCCATCTCTGGTGCTTCTGTTAGTGCCAACAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGCTGTTTACGACGATGCCACTGACACTGCGCTTGGGGCTTGCGGTGGTGGTTGTGGAGTCAGGGGGAGTATTTTGAATGGCTTTGAGAGCACTTCTTCTTTTACTGCTCTTCCGCTTCAGACGGTGCCCAGAGGTGGGACTGAGCCGTTGGAACGGGGTGGGTTCTTTCTATCTGGTCCAATTGAGCGTGGGGTGCTTTCTGGTCCTCTTGATGCGAATGTTGATGGCGCTGGTGCTGCTTCTGCTGGCTCTGGTGGGAGAGTTCATTTCTCCGCTCCGCTTGGTGGTATGTACATGAAGAAGAAGAGGAAGAAAAGCATTTCGGGGTTTAGGAAGGCGTTTACGAGGAATTTTTCCGATAAGCGGCCGTGGGTGGTGCCAGTGTTGAATTTCGGTGCCCGGAAGGAGAGCTCGACAGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGCGATGTTCAATGGGCACTTGGGAAGGCTGGGGAGGATCGTGTACATGTGGTTGTATCGGAGGAGCAAGGGTGGTTGTTTGTTGGGATTTATGATGGGTTTAATGGCCCTGATGCGCCGGAATTCTTGATGGGGAATCTCTATAGAGCAGTGTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGATGATAGTGAGGAGGCTGCTGCAAATGTGGTTGCAGAGAGTACAGTCAGTATGAACGAAACTAATGCTGACCCGTCTACGAGAGCCTCCAGTCAAACGATTGAAACTAATGGGATTGTTTCAGTAGTTGGAAATGAAGGGGAAGCGGAACAACAGGTCCCTGATCGAGGATCAGTGAAGCGGGTTACGTTTCAATCCGTGGATGGATCGGAGCATAGGCGTAGGCGGCAGCTGTGGGAGTATTTAGCAGAGGACGATACACAGGATGGACTTGATCTTTCAGGTTCAGATAGATTTGCATTTTCAGTTGATGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTAAAACAAGGTTTGTCAAAGCATAAAGAGGGTCATCATCATGCTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGAGGCTGAGAATAGGGTGGAGGAGACATCTTATCGAAGCGGTAAAAGGAGAAAGGAAGGTTTAATCGATCATGAGTTGGTGTTGGGCGCATTGTCAAGGGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTCGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGTTGGTTGTGTTAATGAGGGATGAGGATGTGTATGTAATGAATGTGGGTGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCAAATCAAGACTTGAAAGAGGAGGGCGACAAAAGAGCAGGCATGGAGGGTATAATTGAGGAGTCTGCAGATACGAGTGAAGGCAAAATAACTCGAACAAACCAACCTTCGTCTCAGACAGCGAGATTAACTGCATTGCAGCTCTCCACCGATCATAGCACGAGCATTGAAGAGGAAGTTAAAAGAATAAAGAATGAGCACCCTGATGATAAACAATGCATTGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCAGGGTTTTTGAAACAGCCAAAGTTGAATGATGCACTATTGGAAATGTTTCGGAATGAGTATATTGGTACTGCACCATATTTATCATGCATGCCTTCTCTTCGTCACCATAGACTCTGCCCCACAGATCAATTCATCGTGCTCTCATCTGATGGATTGTATCAATATCTAACCAACGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCTGCCAGAAAAGCAGGAATGGATTTTCACGAATTGTTGGACATCCCACAGGGGGATCGGAGGAAGTATCATGACGACGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATACCTTTGA 2406 48.46 MGSGVSSLFSCLKPETRPAAHPADNPDLLFSASDALDETLGHSFCYVRSSNRFLSPTHSDRFLSPSHSLRFSPPHEPSLGARTRTAPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGACGGGCGVRGSILNGFESTSSFTALPLQTVPRGGTEPLERGGFFLSGPIERGVLSGPLDANVDGAGAASAGSGGRVHFSAPLGGMYMKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFGARKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDSEEAAANVVAESTVSMNETNADPSTRASSQTIETNGIVSVVGNEGEAEQQVPDRGSVKRVTFQSVDGSEHRRRRQLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHHHAKTLFPWKYGLGDKEKVEEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYEQQEVGPNQDLKEEGDKRAGMEGIIEESADTSEGKITRTNQPSSQTARLTALQLSTDHSTSIEEEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCMPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9756454 9760848 + Carg12079-RA Car05g01021 149407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01021 801 MobiDBLite consensus disorder prediction 65 84 - -
Car05g01021 801 Pfam Protein phosphatase 2C 514 573 IPR001932 -
Car05g01021 801 Pfam Protein phosphatase 2C 622 754 IPR001932 -
Car05g01021 801 ProSiteProfiles PPM-type phosphatase domain profile. 259 789 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00373 Car-Chr3:4557480 Car05g01021 Car-Chr5:9756454 1.89E-39 dispersed
Car05g01021 Car-Chr5:9756454 Car07g00975 Car-Chr7:5534797 5.72E-40 dispersed
Car16g01017 Car-Chr16:8658307 Car05g01021 Car-Chr5:9756454 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01021 - - bhj:120092087 1395.56