Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01033 ATGGCGGCCACCACATTCACCTCTCTCATCCTCCTCACCCTCTACATAACCACCGCTCAAATTCCCCTCTCCGCCGCCTCCGCCTCCGCCTCCGTCTGCACCTCCACCCCAGACCCCTCCTACTGCAAATCCACCCTCCCCAACCAAACCGGCAATGTCTATTCATACGGCCGCTCATCTTTCAGAAAATCCCTCTCATCCTCGCAAAAGTTTCTCCGGCTAGTCAAAAAGTACCTCCGGTCACGCTCGTCGTTGACCGTCCCCGCCGTCCGAGCGCTGGAGGACTGCCAGCTGTTGGCGGGACTGAATATTGATTACTTAACGACGTCGTTCAGGACGGTGAATACGACGAGTTCAAAGCTGTCGGAGATGAAGGCGGACGACGTACAGAGCTTGTTGAGTGCGATATTGACGAACCAGCAGACGTGTTTGGATGGGCTCAAGGCGACGGCGGGTTCGTGGTCCGTCAAAAATGGCCTTTCCCTCCCACTTGCCTCTGACACCAAGCTGTACTCTATGTCCTTGGCTTTATTTACCAAAGGTTGGGTTCCGAAGAAGAAGAAACGGTCGACATGGACGGCGGCCGGGAGTCAGGGCGGGTTTAGAAACGGTCGGATGTCACTCAAAATGTCGAACAGAGCGAAAGCGATTTACGAGATGGCGACGCGCCGGAATCTGCTGGAGACTGACGACGGCGGCGACGACCAGATTTCGATCAGAGACATCGTCATTGTCAGCCAAGACGGCAGCGGGAATTTCACGACAATTAACGAAGCGATTGCGGCGGCGCCGAATAACTCTGCTCCGACCGACGGCTATTTCTTAATCTTTGTGTCGGTCGGAGTTTACGAGGAATACGTGTCGATTGCGAAGAATAAACGGTATTTGATGATGATCGGAGATGGTATTAATCAGACCGTTATCACTGGTAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGTTTGCGGTGGTGGGACCCGGATTTGTAGCGGTAAACATGACGTTCAGAAACACCGCCGGAGCAATAAAGCACCAAGCCGTCGCCGTCCGTAACGGCGCCGACTTATCCACTTTCTACCTCTGCAGCTTCGAAGGCTACCAAGACACCTTATACACTCACTCCCTCCGCCAATTTTACCGCGACTGCGACATCTACGGCACAGTCGACTTCATCTTCGGCAACGCCGCCGTCGTTTTCCAGAACTGCAACATCTATCCTCGTCTTCCTATGGCGAACCAGTTCAACGCCATCACTGCTCAGGGCCGGACCGACCCAAATCAGAACACCGGAACCTCGATCCATAACTGCCGGATCACCGCCGCTGACGACCTCGCGAACAATACCGGCGTCGCCGTGAAAACGTTCCTCGGACGACCGTGGAAGGAGTATTCAAGGACGGTGTATTTGCAGAGCTTCATGGATGAGCTAATTAATCCGGCGGGGTGGAGGGCTTGGGATAAGGATTTTGCTCTGAACACTTCGTATTATGCTGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTGAATTGGCTGGGATTTCATTTGATTAATGATACCGATGCTGGGAATTTCACGGCGGCGAACTTTGTCTTGGCGGATGATTGGCTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACGGAGTAG 1677 54.14 MAATTFTSLILLTLYITTAQIPLSAASASASVCTSTPDPSYCKSTLPNQTGNVYSYGRSSFRKSLSSSQKFLRLVKKYLRSRSSLTVPAVRALEDCQLLAGLNIDYLTTSFRTVNTTSSKLSEMKADDVQSLLSAILTNQQTCLDGLKATAGSWSVKNGLSLPLASDTKLYSMSLALFTKGWVPKKKKRSTWTAAGSQGGFRNGRMSLKMSNRAKAIYEMATRRNLLETDDGGDDQISIRDIVIVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSVGVYEEYVSIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEGYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANNTGVAVKTFLGRPWKEYSRTVYLQSFMDELINPAGWRAWDKDFALNTSYYAEFGNFGPGSNTSERVNWLGFHLINDTDAGNFTAANFVLADDWLPQTGVPYTSGLTE 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9829928 9831896 - Carg12091-RA Car05g01033 149419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01033 558 Pfam Pectinesterase 243 541 IPR000070 GO:0030599|GO:0042545
Car05g01033 558 Pfam Plant invertase/pectin methylesterase inhibitor 30 177 IPR006501 GO:0004857
Car05g01033 558 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01033 Car-Chr5:9829928 Car20g00959 Car-Chr20:11106134 0 dispersed
Car18g00889 Car-Chr18:9779867 Car05g01033 Car-Chr5:9829928 1.66E-17 dispersed
Car01g01255 Car-Chr1:11432058 Car05g01033 Car-Chr5:9829928 5.19E-60 transposed
Car17g01015 Car-Chr17:8052657 Car05g01033 Car-Chr5:9829928 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01033 K01051 - csv:101205321 986.867