Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01071 ATGCAAGATATCTTTGCTTCTGTTCGCCGATCATTGGTGTTTCGCGCTCCTCTTGAGAATGAGGATCCTCATTCCCCTGCAATTGGAGTTGGAGCCCTAGTTGATAAGATTAACTCCAGCATTCGGAAATCCAGAGTGTTTTCTAGGCACTCCCCCTCGTCCTCGGCTCTTCCTCCCATCCCCAAGGAAACTGACCCTCCGATTCGATGGCGCAAGGGCGAGTTGATTGGCTGCGGCGCCTTTGGTCGGGTGTATATGGGTATGAATCTTGGCTCTGGAGAGCTTCTCGCTGTCAAGCAGGTTCTGATTGCTGCAAATGGCGCTTCGAAGGAGAAAGCGCAGACTCACATTAAGGAGCTTGAGGAAGAAGTGAAACTTCTCAAGGATCTTTCTCATCCAAATATTGTTAGATACTTGGGGACAGTCAGAGAGGATGATTCTTTAAATATATTATTGGAGTTTGTCCCTGGTGGATCAATATCGTCACTTTTGGGGAAATTTGGAGCCTTTCCTGAAGCAGTTTTAAGAACATATACAAAACAGTTATTATTGGGATTGGAATATTTACACAAGAACGGTATCATGCACAGGGACATTAAGGGGGCGAATATCCTTGTAGATAACAATGGATGCATTAAGCTTGCTGATTTTGGGGCATCAAAACAAGTTGTCGAGCTGGCTACAATTTCAGGAGCAAAGTCTATGAAGGGCACTCCATATTGGATGGCTCCTGAAGTAATTCTGCAGACCGGGCATAATTTCTCTGCTGACATATGGAGTGTTGGATGCACTGTTATTGAGATGGCTACAGGAAAGCCTCCTTGGAGCCAACAGTATCAAGAGGTTGCTGCTCTTTTTCATATAGGTACAACGAAGTCTCATCCACCAATCCCCGAGCAGCTTTCGGTTGAAGCTAAAGATTTTCTGTTGAAATGTTTGCAAAAGGAACCAAACTTAAGACCAGCTGCCTCTGAACTCTTGAAGCATCCGTTTGTTACCGGGGAGGAGGCAGAATCTCAACTCGTGTCACGTGATGCATGCACGGAGCCCTTGGAAATCCATTCACCTTTGTATACTTCAAAGTTTGAAATGAGTAAAACTCCAACACATCCTGGATCAAGTGATATTTGTAATTTGGATAGCCTGAGCTGCTCAAAGGTATACACTGCAAACAAACTAGAAAGCGATATATGGACAGCAAACAGTGATGATGAAATGTGTCAGATTGATGACAAGGATGATTTAATGTTAGATGAAGTAAAAATCGGTTCTTCTATTGTACATGAGAATTTGAAGAGTTATAACCCAATTTGTGAGCCCTCCGATGATGAGGATTGCAAATTTGATAGAAGTCCAGCAGTAGACCGAGGAAGCAATTTAGAAGAGGAAGCTCTTGCAGCTAGAAGCTGTTCAGGAGTTTTTGACGAGGACCAGAACTTCTCATTTCCTAGGGGACGATCACTCTCTGAAGACGAGGATGAGCTTACTGAATCAAAAATTAAAGCTTTCTTGTATGAAAAGGCTCTTGAATTGAAGAAACTTCAGTCACCGCTTTATGAGGAATTCTACAATAGTTTGAATGCATCCTGCTCTCCAGTTTTTATTGAGAGTAAACGAGATGAAAGTACTCCCACATACTTGAAATTGCCTCCGAAAAGCTGGTCACCAAGTCGAAGTCCTGGTAATCCATCCCCAGCAATTGATGCTTTTGGCACTGGTAGCCCAGCTAGTGGTAGCAGGGGTAATGCAAATGATCAGAGATCACAACTCAGCGATTGGAAAGGACTTCTAGTTGATGGTCAGTCAGAAGCTGGTAGCCCGAGCAGCAAGCATTATTCTGATATACAAAGGAAGTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAAAAACGAGAGATGATGCGTCAAGCTGGTGGCGGAGGCAAAACTTCATCACCAAAGGATAAAGCCATGGGCCGACACAGAGAGCGGACTAGATTTGCATCTCCATTACGAGATGATGCATCGGGCGCTGGAAGGGAGAACAGGGAAAACATCATCTCCTGA 2046 44.13 MQDIFASVRRSLVFRAPLENEDPHSPAIGVGALVDKINSSIRKSRVFSRHSPSSSALPPIPKETDPPIRWRKGELIGCGAFGRVYMGMNLGSGELLAVKQVLIAANGASKEKAQTHIKELEEEVKLLKDLSHPNIVRYLGTVREDDSLNILLEFVPGGSISSLLGKFGAFPEAVLRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNNGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHNFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGTTKSHPPIPEQLSVEAKDFLLKCLQKEPNLRPAASELLKHPFVTGEEAESQLVSRDACTEPLEIHSPLYTSKFEMSKTPTHPGSSDICNLDSLSCSKVYTANKLESDIWTANSDDEMCQIDDKDDLMLDEVKIGSSIVHENLKSYNPICEPSDDEDCKFDRSPAVDRGSNLEEEALAARSCSGVFDEDQNFSFPRGRSLSEDEDELTESKIKAFLYEKALELKKLQSPLYEEFYNSLNASCSPVFIESKRDESTPTYLKLPPKSWSPSRSPGNPSPAIDAFGTGSPASGSRGNANDQRSQLSDWKGLLVDGQSEAGSPSSKHYSDIQRKWKEELDQELEKKREMMRQAGGGGKTSSPKDKAMGRHRERTRFASPLRDDASGAGRENRENIIS 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10323691 10328492 - Carg12903-RA Car05g01071 149457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01071 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Car05g01071 681 Pfam Protein kinase domain 71 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01071 681 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Car05g01071 681 MobiDBLite consensus disorder prediction 541 681 - -
Car05g01071 681 MobiDBLite consensus disorder prediction 613 636 - -
Car05g01071 681 MobiDBLite consensus disorder prediction 647 681 - -
Car05g01071 681 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01071 681 Coils Coil 616 636 - -
Car05g01071 681 MobiDBLite consensus disorder prediction 575 591 - -
Car05g01071 681 Coils Coil 110 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01071 Car-Chr5:10323691 Car17g00232 Car-Chr17:1433358 0 dispersed
Car07g00333 Car-Chr7:1675638 Car05g01071 Car-Chr5:10323691 4.62E-17 dispersed
Car12g01043 Car-Chr12:10280423 Car05g01071 Car-Chr5:10323691 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88893 PF00069 Pkinase 4.80E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01071 K20606 - csv:101209358 1223.38