Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01086 | ATGGCATTAGAAGCTGTGGTTTTTTCTCAAGATCTTTACACCTCGTTTGGTGGAGGGATTTGGACAAATGGGAGCTTTCAATTTCCCCAAATCCCTCATGATTTTCCCGAGAAACAAACAGAAAATTACCCTTTTGAAGATTGGAACTCATCCTCCTCTGTTTTGCTTCCTATTCCTTCCCCTGAAGAACCTGCCATTTCCAGAAATCCGCCATTGGAGGCTGAATCAAGAACTCCAAACCCAATTCGACCCAGAAAACGACGACCCAAATCCCGCAAGAACAAGGAAGATATCGAGAATCAGAGAATGACCCACATCGCTGTTGAACGAAATCGACGAAAACAGATGAATGAGTATCTCTCTGTTCTTAGATCCTTAATGCCAGAGTCTTATGTTCAAAGGGGGGATCAAGCTTCAATTATTGGGGGAGCTATTAATTTTGTGAAGGAGCTTGAGCAACAAGTTCAAGTTCTATCAACAATGGAAACAAAAACAAAGGGCTGTTCTTCATCAAAGCCCCCTTTTTCTGAGTTCTTCACCTTCCCTCAGTTCAAATCAATGGAGGGTTGTTGTTCATTGGGTGAAAACGAAACCCAATGTTCTTCCATTGCTGATATTGAAGTAACAATGGTGGAAAATCATGCAAATTTGAAAATCAGGTCAAAGAGAAGGCCAAAACAAGCCTTGAAAATCGTTGCTGGCTTGCATTCTCTTTGCCTCTCTGTTCTTCATCTCAATATCTCTACCATAAACCAAATTGTTCTTTACTGTCTGAGCGTGAAGGTTGAAGATGATTGCAAGCTGAATTCTGTCGATGAAATTGCATCTGCTCTGCATCAGTTGCTTTGTAGAATCGAAGAAGAATCAGTGATGAACTGA | 879 | 41.18 | MALEAVVFSQDLYTSFGGGIWTNGSFQFPQIPHDFPEKQTENYPFEDWNSSSSVLLPIPSPEEPAISRNPPLEAESRTPNPIRPRKRRPKSRKNKEDIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGDQASIIGGAINFVKELEQQVQVLSTMETKTKGCSSSKPPFSEFFTFPQFKSMEGCCSLGENETQCSSIADIEVTMVENHANLKIRSKRRPKQALKIVAGLHSLCLSVLHLNISTINQIVLYCLSVKVEDDCKLNSVDEIASALHQLLCRIEEESVMN | 292 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 10408735 | 10410047 | + | Carg12888-RA | Car05g01086 | 149472 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01086 | 292 | MobiDBLite | consensus disorder prediction | 54 | 102 | - | - | |
| Car05g01086 | 292 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 100 | 162 | IPR036638 | GO:0046983 | |
| Car05g01086 | 292 | PANTHER | HELIX-LOOP-HELIX-LIKE PROTEIN | 1 | 292 | - | - | |
| Car05g01086 | 292 | SMART | finulus | 106 | 157 | IPR011598 | GO:0046983 | |
| Car05g01086 | 292 | Pfam | Helix-loop-helix DNA-binding domain | 101 | 152 | IPR011598 | GO:0046983 | |
| Car05g01086 | 292 | PANTHER | MAX DIMERIZATION, MAD | 1 | 292 | - | - | |
| Car05g01086 | 292 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 151 | IPR011598 | GO:0046983 | |
| Car05g01086 | 292 | Gene3D | - | 99 | 167 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00466 | Car-Chr5:2652809 | Car05g01086 | Car-Chr5:10408735 | 2.81E-90 | dispersed | |
| Car05g01086 | Car-Chr5:10408735 | Car07g00506 | Car-Chr7:2559697 | 1.36E-91 | dispersed | |
| Car01g01164 | Car-Chr1:10794794 | Car05g01086 | Car-Chr5:10408735 | 4.45E-76 | transposed | |
| Car10g00928 | Car-Chr10:7168992 | Car05g01086 | Car-Chr5:10408735 | 7.75E-29 | wgd | |
| Car12g01056 | Car-Chr12:10368142 | Car05g01086 | Car-Chr5:10408735 | 1.61E-99 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3598 | PF00010 | HLH | 6.80E-10 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01086 | - | - | csv:101212782 | 453.366 |