Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01106 ATGGGTGCTCAGAGAAAGGGGGCATCGCGGGTTTCCGAGGACTCCGAGGAGTTGGCACGAGTTTCGTTGCAGGCAGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGTCCCATAACGCTTGAACGACCCAAGGTATTACTGCCGCTGGTAAATGTCCCTATGATTAATTATGCCTTATCCTGGCTCGAATCGGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTACTTGGAGAATTCTGAGTGGGTATCCCTACCAGACTTTGCAGTCACGACTATAGAGTCACACAACTCCATTAGTGCTGGAGACGCCCTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGCCACTTACGCAAGCTCTTCAAGAACACAAAGATAGAAAGAAGAAAGATAGTAATGCCGTGATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCAATCACACACCAATCTCGGCTTGGCACTGATGAACTGTTTATGGCGATTGATCATAATTCTAAGCAGCTCTTATACTATGAGGATAGGGCTGACGATTCAAAAGGAATTATACATCTGGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACTTGCAGGATTGTTATATAGACATATGCTCCCCAGAAGTACTCAGCCTGTTTACTGACAATTTTGACTACCAACATCTACGTCGCCATTTTGTCAAGGGTTTGCTCTTAGATGACATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCCAGAATCGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTGGTACCGGATGTTAAATTCTTTGGGAATTCTGCTTATAAACTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCACAGGTTGGTCCGTTTACTGTTATTGGAGATAACAGCAAAATTGGTGACAACACCAAAATTACGAATTCAATTATTGGGCAAGGTTGTAGCATTGGATCTAATGTTACAATTGAAGGCTCTTATATATGGGACAACGTCACCATTGAAGATGGCTGTAAACTTAGTCATGCTATCGTTTGTGATGGAGTTATTATAAAGTCAGGGGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAGTTTATTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAATCAATCAAGATAGCGATGATGAGCTGGAATATGCAGATAATAGCAGTGGTATAGTAGAATTTGCAGATACAACGGACAAGTCAAATAATGAACTGATGTCCAAATCGCTGGAAATGCAAGGCTTGCCTGCATCTGAGCTAGGCAATGGAGGTATAGGACATGTTTGGTCAATTTGTGAAGGAAGTGTTGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAGGCTTGAGAAGATTCTGCAAAAAGCGACAGATGATGAGCTGGAGTTAACTCGAGATGCTAATGTTCTTCCAACTTCAGGAGAGTTGAAGTCTGACTCAAATGTCTCAGATGGTGATGATAATGAAGACTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGGTGTGCACGAAAATATTAAAGTAGACAATGTAATTTTGGAAGTGAACTCATTGCGGTTGTCATATAATAAGGTGGCTGCAGATTGTGCAGGAGCATTGTTTTATTCCCTGATGAAATTTGCCTTAGACTCTCCACATGGTTCATCTAGTGAGCTACTGCAAAACACTACAAATATAATTACGAAATGGAAAAAACTTTTGAAGTACTACTTAACTGACATGGATGAAGAGATTGAAGTGATATTAAAATTTGAAGAGATGTGCCTGGAATCGGCCAAGGAATTCACCCCACATTTTACTAAGATTTTGTGTCATCTATATGACCAAGAAATCATTCAAGAAGATGCTATTCTAAGGTGGGATGATGAGAAAAAGGAAGCGGATGATTCGGATAAGCTTTTCGTTAAGCAGGCCGAGAAATTCATCGAATGGTTAAGAGTTGCATCAGAAGAGGAAGATGATGAAGAGGAGGAATAG 2196 41.12 MGAQRKGASRVSEDSEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYALSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMPLTQALQEHKDRKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNSKQLLYYEDRADDSKGIIHLDKSLLMDNPSISLHNDLQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSKIGDNTKITNSIIGQGCSIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVIIKSGAELEPGVILSFKVVVGDQFIVPSYSKVSLFQQPINQDSDDELEYADNSSGIVEFADTTDKSNNELMSKSLEMQGLPASELGNGGIGHVWSICEGSVEEEWRHSVAPIPADRLEKILQKATDDELELTRDANVLPTSGELKSDSNVSDGDDNEDSRDDSIHFEKEVEATFLRGVHENIKVDNVILEVNSLRLSYNKVAADCAGALFYSLMKFALDSPHGSSSELLQNTTNIITKWKKLLKYYLTDMDEEIEVILKFEEMCLESAKEFTPHFTKILCHLYDQEIIQEDAILRWDDEKKEADDSDKLFVKQAEKFIEWLRVASEEEDDEEEE 731
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 10621646 10633511 + Carg23425-RA Car05g01106 149492
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car05g01106 731 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Car05g01106 731 Gene3D - 550 729 - -
Car05g01106 731 MobiDBLite consensus disorder prediction 528 560 - -
Car05g01106 731 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Car05g01106 731 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
Car05g01106 731 PANTHER - 9 730 - -
Car05g01106 731 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 9 730 - -
Car05g01106 731 Pfam eIF4-gamma/eIF5/eIF2-epsilon 649 728 IPR003307 GO:0005515
Car05g01106 731 Coils Coil 720 731 - -
Car05g01106 731 Gene3D Hexapeptide repeat proteins 319 426 - -
Car05g01106 731 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 9 303 IPR029044 -
Car05g01106 731 CDD W2_eIF2B_epsilon 558 722 IPR044123 GO:0005085|GO:0031369
Car05g01106 731 ProSiteProfiles W2 domain profile. 557 728 IPR003307 GO:0005515
Car05g01106 731 SMART 542_3 637 724 IPR003307 GO:0005515
Car05g01106 731 CDD LbH_eIF2B_epsilon 341 419 - -
Car05g01106 731 Pfam Bacterial transferase hexapeptide (six repeats) 340 373 IPR001451 -
Car05g01106 731 Coils Coil 511 531 - -
Car05g01106 731 SUPERFAMILY ARM repeat 563 719 IPR016024 -
Car05g01106 731 MobiDBLite consensus disorder prediction 545 560 - -
Car05g01106 731 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00444 Car-Chr1:2553670 Car05g01106 Car-Chr5:10621646 1.23E-06 dispersed
Car04g02950 Car-Chr4:22158433 Car05g01106 Car-Chr5:10621646 1.74E-24 dispersed
Car05g00753 Car-Chr5:5660287 Car05g01106 Car-Chr5:10621646 1.04E-06 dispersed
Car05g01106 Car-Chr5:10621646 Car11g00677 Car-Chr11:3785856 1.10E-14 dispersed
Car12g01070 Car-Chr12:10476722 Car05g01106 Car-Chr5:10621646 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01106 K03240 - csv:101217025 1311.59