Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01115 ATGGATGGTCTCTTAGATCTTGAGCCCGATTGCTCTGTTTTTGTTGAAGTTGATCCCACTGGCAGATATGGCAGATACGATGATGTTTTGGGGAAAGGAGCTTCGAAAACAGTTTACAGAGCATTTGATGAATATGAAGGAATCGAGGTCGCTTGGAATCAAGTGAAACTCTATGATTTCTTGCAAAGTCCTGAAGATTTGGAAAGGCTTTACTGTGAGATTCATCTTTTGAAAACATTGAAGCATAGAAATATTATGAAATTCTACACTTCTTGGGTTGATATTGCTAATAGAAACATCAATTTTGTTACTGAAATGTTCACTTCTGGTACTCTTAGACAGTATAGGTTGAAGCATAAGAGAGTTGATATTAGAGCTGTGAAGCATTGGTGCAGGCAGATTTTGAGGGGGCTTCATTATTTGCATAGCCATGAGCCTCCTGTGATCCATAGAGATCTCAAGTGTGATAATATCTTTGTTAATGGGAATCAAGGGGAGGTTAAGATTGATTGTGGAGCGTTCGGGCTTTTCTCGATCTTATTCGTAGTTAGGAAGGGGAAGGAGTCTAAATCAATGGACATTAATGAACCCGAACCGTCTCTACATGTTCCCTCGAAACTCTATTCATTTCAGGGGTTGTTTGGCTTAAAGATTATGCAAACTCTAGCTATTGATGATTTTCTTATTGTCGTTAGGTCTGAGTGTTATAAATTTATAGGGACACCCGAGTTTATGGCTCCAGAAGTGTATGCGGAGGCGTACAACGAATTAGTCGATATCTATTCATTTGGAATGTGCATGCTGGAGATGATAACTTTCGAGTATCCATACAGCGAATGCACTCATCCCGCTCAGATCTACAAGAAAGTCATATCTGGGAGAAAACCAGATGCCTTGTACAAAGTGAAGGATCCCGAAGTGCGACGGTTCATCGATAAGTGTTTGGCGACCGTTTCGCTTAGGCTATCAGCATCGGAGCTTTTGAATGATGCTTTTCTTCAAGTTGATAATGGCGAATATGATCTAAGAACCGTTGATTATGACAGCTCCTTTTGTAATGGATATCCATATGATTATAGTTTTGAAGCTTCAAGTGAGTCAGGTTATCATCCAATTGATACTCAAACCAATGGCATTGAACTTTTTGAGTATTGTGAAGGTGAACACTCTGATGATGTTGATATCAGCATCAAAGGGAAGATGAGAGAAGGTGGTAGCATCTTCTTAAGACTCAGAATTGCAGATAAAGAAGGGCTTATCAGGAACATTTATTTCCCGTTCGACGTCGAGACGGATACAGCATTGAGTGTTACGAGGGAAATGGTTGCAGAGCTGGATATTACAGATCAAGACGTAACGAGAATTGCTGATATGATCGACGGGGAAATCGCTTCCTTGGTGCCTGAATGGAGGTCGGGTCTGAGGCAAAGCTATTGCCATAATTGTGCTACTGCTACTTACAACAATGCCATAATTGAGAACTCTGAGGTAGCTCCATGCTGTGGACATCGACATGCTTCGATTCATGGTCGTTTTGAGGAGATAATGTATCAAGCTGACGAGTCCGAGAATCATACAGCAGAGGCTGCAGAAAATGTGTTGAGCCATTCTGTTTGCTTGAATTATCCCGAAACGTGGGGACGTCATGAAAGCCGTGAACTTAGTTCAATGAGCTCAAGACATAGCCACTCGGATGAAGATTACGAGAAAACAGATCGATCAGTTACAGTCATGGACACGAAAGAAGTGATAATCGAACGTAAAACTGCTCTTAACACGAGACGTTCGCTTCGGAGCCTATTGAATTCCCCTTCATTAGATGATGTTCAACAAGAAATGAGATGGATTAAGGCCAAGTACCAAATAGAATTAAGCAAGCTCAGAGATGATAAGGTATGCTCGAGACACGAACCGAACTGTTGCGGTACGGACTCGGAAAGAGCTCGAAATCGCAAGGCCATGGAGGCGGCCTCCATTGTGGAGAAGGTAGTCACTGCTAAAAATGCCTGCACTGGTTCATTGCTGCCAAGCTCACTTCATAGAACTATCTCTCTCCCAGTTGATGCTGTGAATATGTAA 2079 41.9 MDGLLDLEPDCSVFVEVDPTGRYGRYDDVLGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDIANRNINFVTEMFTSGTLRQYRLKHKRVDIRAVKHWCRQILRGLHYLHSHEPPVIHRDLKCDNIFVNGNQGEVKIDCGAFGLFSILFVVRKGKESKSMDINEPEPSLHVPSKLYSFQGLFGLKIMQTLAIDDFLIVVRSECYKFIGTPEFMAPEVYAEAYNELVDIYSFGMCMLEMITFEYPYSECTHPAQIYKKVISGRKPDALYKVKDPEVRRFIDKCLATVSLRLSASELLNDAFLQVDNGEYDLRTVDYDSSFCNGYPYDYSFEASSESGYHPIDTQTNGIELFEYCEGEHSDDVDISIKGKMREGGSIFLRLRIADKEGLIRNIYFPFDVETDTALSVTREMVAELDITDQDVTRIADMIDGEIASLVPEWRSGLRQSYCHNCATATYNNAIIENSEVAPCCGHRHASIHGRFEEIMYQADESENHTAEAAENVLSHSVCLNYPETWGRHESRELSSMSSRHSHSDEDYEKTDRSVTVMDTKEVIIERKTALNTRRSLRSLLNSPSLDDVQQEMRWIKAKYQIELSKLRDDKVCSRHEPNCCGTDSERARNRKAMEAASIVEKVVTAKNACTGSLLPSSLHRTISLPVDAVNM 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10707838 10711553 - Carg23434-RA Car05g01115 149501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01115 692 ProSiteProfiles Protein kinase domain profile. 24 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01115 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Car05g01115 692 Pfam Protein kinase domain 235 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01115 692 Pfam Protein kinase domain 28 169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01115 692 MobiDBLite consensus disorder prediction 553 574 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01115 Car12g01079 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01115 Car-Chr5:10707838 Car08g01027 Car-Chr8:7007254 0 dispersed
Car12g01079 Car-Chr12:10561342 Car05g01115 Car-Chr5:10707838 7.61E-113 wgd
Car17g00216 Car-Chr17:1308498 Car05g01115 Car-Chr5:10707838 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88895 PF00069 Pkinase 1.70E-26 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01115 K08867 - csv:101219552 978.393