Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01160 ATGGCGAATAAAGGCAGAGATGGTGAACACTCGAGTTTACTCGACGGGAAGTACGAATTCGGCCGTCTTTTAGGGCACGGGACCTTCGCTAAGGTTTACCATGCCCGGAATCTGCAAACGGGGAAGAGCGTTGCGATGAAAGTTGTTGGGAAGGAGAAGATCATCAAAATCGGCATGATGGAGCAGATCAAGAGAGAAATCTCTGTGATGAAAAGGGTGAAGCATCCGAATATTGTGGAGCTTCATGAGGTGATGGCGAGTAAATCGAAGATCTATTTTGCGATGGAGCTTGTTAGAGGCGGTGAACTGTTCTCCAAAATCGTGAAAGGTCGGTTGCGAGAGGATGTGGCTAGGGTTTACTTTCAGCAATTGATCTCTGCAATCGATTTCTGCCATAGCCGTGGTGTTTACCACCGCGATCTGAAACCGGAAAATCTGCTACTCGATCAGGACGGAAACCTTAAGGTCACCGATTTTGGCCTCACCGCCTTCTCGGAGCATTTGAAGCAAGACGGACTGTTGCACACGACATGCGGAACTCCGGCGTACGTTGCGCCGGAGGTTATGGGAAAGCAGGGATACGACGGGGCTAAGGCCGATCTCTGGTCCTGTGGAGTCATCCTGTACGTTCTTCTTGCCGGATACCTTCCATTCCAGGACGACAATATGGTGGCGATGTACCGGAAGATTTACAGAGGCGATTTCAGGTGTCCACCGTGGTTCTCTCCCGAAGCTCGCCGCCTTGTCACGAAGCTTCTAGATCCGAATCCGGTGACCAGAGTCGGTATCGCGAAGATCACATCGTCGTTATGGTTCAAGAAATCGGTACCGAAGAGTGTGATTACGAAGGAGCAAGAAGAAATGGAGGAGAATTTGGCGAAATCGAATCAACCGGCGGAAACCTTGAACGCATTCCACATAATATCTCTATCGGAAGGGTTTGATTTGTCGCCGTTGTTCGAAGAGAAGAAGAGGGAGGAGAAAGAGGAGATGAGATTCTTGACTTCATCTCCGGCGAGCAGTGTGATATCGAAGCTTGAGGAAGTGGCGAAGGCAGTGAAGTTCGATGTGAGGAAGAGCGAGTCGTGGGTTCGATTGCAGGGGCAAGAGAAGGGGAGAAAGGGGAAACTAGCGATTGCGGCGGATATCTTTGCGATGACGCCGTCGTTTGTGGTGGTGGAGGTGAAGAAGGACAACGGAGACACTTTAGAATACAATCAATTCTGCAGGGAGGAGCTCCGGCCGGCATTGAAGGACATTGTTTGGACTTCTCCGACTGGGAGCTCGACCCCAGCTTGA 1299 50.73 MANKGRDGEHSSLLDGKYEFGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKIIKIGMMEQIKREISVMKRVKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIVKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDQDGNLKVTDFGLTAFSEHLKQDGLLHTTCGTPAYVAPEVMGKQGYDGAKADLWSCGVILYVLLAGYLPFQDDNMVAMYRKIYRGDFRCPPWFSPEARRLVTKLLDPNPVTRVGIAKITSSLWFKKSVPKSVITKEQEEMEENLAKSNQPAETLNAFHIISLSEGFDLSPLFEEKKREEKEEMRFLTSSPASSVISKLEEVAKAVKFDVRKSESWVRLQGQEKGRKGKLAIAADIFAMTPSFVVVEVKKDNGDTLEYNQFCREELRPALKDIVWTSPTGSSTPA 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11060904 11062202 + Carg23011-RA Car05g01160 149546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01160 432 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01160 432 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01160 432 ProSiteProfiles NAF domain profile. 297 321 IPR018451 GO:0007165
Car05g01160 432 Pfam NAF domain 300 359 IPR004041 GO:0007165
Car05g01160 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Car05g01160 432 ProSitePatterns Protein kinases ATP-binding region signature. 24 51 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g01160 Car-Chr5:11060904 Car13g00481 Car-Chr13:7049770 0 dispersed
Car10g00439 Car-Chr10:2206179 Car05g01160 Car-Chr5:11060904 0 wgd
Car12g01122 Car-Chr12:10933078 Car05g01160 Car-Chr5:11060904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88898 PF00069 Pkinase 6.30E-71 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01160 - K07198 csv:101208458 779.63