Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01161 | ATGAGACTCACCAACTCCCTCCCCGACCTCCATAGCCACCGCCGTAACCACCCACCGGAGACCGACGACTCTCAACTCCACCACCACCTTCAGACTTCCGTCTTCCATCCACCTTCCTTCTCCTCTGATGATTTCCTCGACCAAATCCTCTCCACCGCCCCCTCTCCCTGGGAACTCCCCGTCGGACTTCCAAATCCCCACTCCAACCTCCCTCCTCAGCCACCGCCGCCATCTAATCCCGACAATGTCGCGTTTCAGATCGGTGACGCAACTCCAGCGGGCAAAATGGCCATGGCCTTGCTTCAACAGCAGTTACTCATGTCGAGAGGAATCGCCACCGTCTCCGATGATTCCAGTCTCCTTCCAATGCTTAGTAACGACGTCGTTGATGTCGAAGGCTCTTCGTCCTTCAAATGCCCTAATCCGATTAACCACGGCTCTGTCATTCCCTCCATCTTCAACGAATTCACCGGGTTTCTGAACGCCTCTGGTTCCAGCCAGAACCAGAATCAATTTCAGGCAGGAAACTCAAATTCACAGAAACAGAACTTCATAGCTCCGGTATCAATCAATCCTCCACCTCCGTCTGTCCCTGGCTCCGGCGGTGGTTCTGCAACATCAGCTCAGCCCCGGCAGAGAGTCAGAGCTCGGAGAGGACAAGCCACAGATCCTCACAGTATAGCGGAAAGATTGCGAAGAGAACGAATTGCAGAGAGAATGAAAGGTCTGCAAGAACTGGTTCCCAACGCGAACAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGACTACGTAAAGTTCCTTCAGCTTCAAGTCAAAGTTCTGAGCGTCAGCAGATTGGGCGGTGCCACCGCCGCCATGCCTTCCCTTCTACCCGATTCTTCCACTCAGGGTGGCACTGATTGCAACCTGTCCAACGAAACCGGTGGGGCTGTTGGACAGACCTCTTCTGGAGCTCCGATGAGTAACGACGGGATGGCGATAACGGAGAACCAGGTGGTGAAGTTAATGGAGGAGGACATGGGCTCCGCCATGCAGTACTTACAAGGCAAAGGTCTCTGCCTCATGCCCATCTCTCTCGCCACCGCTATCTCTGCTGCCACGTGTCACAGCCGCCCCATCACGACATCGAAGGGTGGAGGAGATGCCCCCACTTCTCCCAGCCTCTCGGCGTTGACCAGTCAGTCAACCGTCTTGGGTAACGGCACCGTCGACAGAGCGGTCAGAGACTCTGCCTCCGTTTCGCGACCGTGA | 1257 | 55.21 | MRLTNSLPDLHSHRRNHPPETDDSQLHHHLQTSVFHPPSFSSDDFLDQILSTAPSPWELPVGLPNPHSNLPPQPPPPSNPDNVAFQIGDATPAGKMAMALLQQQLLMSRGIATVSDDSSLLPMLSNDVVDVEGSSSFKCPNPINHGSVIPSIFNEFTGFLNASGSSQNQNQFQAGNSNSQKQNFIAPVSINPPPPSVPGSGGGSATSAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSVSRLGGATAAMPSLLPDSSTQGGTDCNLSNETGGAVGQTSSGAPMSNDGMAITENQVVKLMEEDMGSAMQYLQGKGLCLMPISLATAISAATCHSRPITTSKGGGDAPTSPSLSALTSQSTVLGNGTVDRAVRDSASVSRP | 418 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11070798 | 11074449 | - | Carg23012-RA | Car05g01161 | 149547 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 376 | 418 | - | - | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 57 | 80 | - | - | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 376 | 403 | - | - | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 7 | 27 | - | - | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Car05g01161 | 418 | Pfam | Helix-loop-helix DNA-binding domain | 225 | 270 | IPR011598 | GO:0046983 | |
| Car05g01161 | 418 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 220 | 269 | IPR011598 | GO:0046983 | |
| Car05g01161 | 418 | MobiDBLite | consensus disorder prediction | 184 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g01161 | Car-Chr5:11070798 | Car12g00819 | Car-Chr12:7854264 | 3.33E-57 | dispersed | |
| Car17g00896 | Car-Chr17:7437342 | Car05g01161 | Car-Chr5:11070798 | 5.78E-16 | dispersed | |
| Car10g00442 | Car-Chr10:2224460 | Car05g01161 | Car-Chr5:11070798 | 2.47E-105 | wgd | |
| Car12g01123 | Car-Chr12:10941072 | Car05g01161 | Car-Chr5:11070798 | 1.85E-178 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3602 | PF00010 | HLH | 4.60E-09 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01161 | - | - | csv:101222794 | 587.03 |