Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01168 ATGTGTGTGACGGATGCAGAGCAGGTTGGGACTGAGAGGCCGAATTCTGGGGTTAATAATACCATGCCTTGGCCGTTGCATTGTGATTTTTTGCAGAATCAGATGGGGAATCCTGATAAGCAGCCTGCTCTCATTGGAACTAGCGATCGAACCCGCTCTGGGAATTCTTTTCCTCTAGAAAGCATTTCCGAGGATGCTGCATTTATAGATCGGAAAGACAACCCATCTACTTTTGTTCCGGTTCTTAGATCAGGAGAATGGTCTGATATCGGAAAGCGTCCTTATATGGAGGACACTCATGTATGCATTCATGACATGGCTAAGAAGTTCGGCTGTAGTTTTCTCAACGAGGAAGCTGTCTCCTTCTACGGGGTATTTGACGGTCATGGAGGAAAAGGCGCCGCACAATTTGTTCGTGACCACTTGCCGAGAGTCATTGTTGAAGATTCTGACTTTCCTTTAGAGCTCGAAAAGGTGGTTACGAGATCATTTATGGAGACTGATGCAGCTTTTGCTAGATCTTGCACTCTTGAAACATCTCTGTCTTCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTCGTAGCAAATGCTGGCGATTGCCGAGCAGTACTGTCAAGACAAGGACGTGCAATAGAAATGTCAAAAGACCACAGACCATGCTGCACAAAAGAAAAAAAGCGAGTCGAGGCCTTGGGTGGATTCATTGATGACGATTATCTAAACGGCCTGCTCGGGGTTACACGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAGGAAACAAGTGAAAAAGGTGGACCATTAAGTGCCGAACCAGAACTAAGATTAATGACATTGACAAAAGAGCACGAGTTCTTGATCATCGGTAGTGATGGAATATGGGACGTCTTCACAAGCCAGAACGCTGTCGATTTTGCTCGGAGGAGGCTCCAAGATCACAATGATGCAAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATAAAGAGAGGAGCAACAGACAATTTAACAGTAGTTTTGGTTAGCTTTCACTTGGAGCCTCCACCACCGGTAGTTTTTCAGAGGCCAAGATTTAGAAGAAGCATATCTGCAGAGGCTCTTCAGAACCTCAAATTTCATCTAGAAGGATAG 1146 45.11 MCVTDAEQVGTERPNSGVNNTMPWPLHCDFLQNQMGNPDKQPALIGTSDRTRSGNSFPLESISEDAAFIDRKDNPSTFVPVLRSGEWSDIGKRPYMEDTHVCIHDMAKKFGCSFLNEEAVSFYGVFDGHGGKGAAQFVRDHLPRVIVEDSDFPLELEKVVTRSFMETDAAFARSCTLETSLSSGTTALTAMIFGRSLLVANAGDCRAVLSRQGRAIEMSKDHRPCCTKEKKRVEALGGFIDDDYLNGLLGVTRAIGDWHLEGMKETSEKGGPLSAEPELRLMTLTKEHEFLIIGSDGIWDVFTSQNAVDFARRRLQDHNDAKVCCKEIVEEAIKRGATDNLTVVLVSFHLEPPPPVVFQRPRFRRSISAEALQNLKFHLEG 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11118947 11124282 + Carg23019-RA Car05g01168 149554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01168 381 ProSiteProfiles PPM-type phosphatase domain profile. 83 348 IPR001932 -
Car05g01168 381 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Car05g01168 381 ProSitePatterns PPM-type phosphatase domain signature. 122 130 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01594 Car-Chr1:13166860 Car05g01168 Car-Chr5:11118947 1.33E-102 dispersed
Car05g01168 Car-Chr5:11118947 Car09g00033 Car-Chr9:162494 2.55E-103 dispersed
Car12g01132 Car-Chr12:11013834 Car05g01168 Car-Chr5:11118947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
3604 PF00481 PP2C 8.20E-68 CL0238 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01168 K14803 - csv:101210349 695.271