Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car05g01205 | ATGTCAAGCTGCATCAACAGTGCACAAGAGCAGCTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAGCAATATCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCAGCTTTCCAATCTCTCTCATGGCAGAATTCTCAGGCATCAAACCACACCCACAGTGGGCTTGCAGCTGATCATTACAGAGCTGAATTGGGTTCATCATCAAAATGCAACAACAAAATGAAGATGAGAGCTCCAATTAGAAACCCTACAAATGATGATCAAAGGATCATGAATCGAGCTCCCGAGAAGAAGCAGAGAGTACCTTCTGCATATAATCAGTTCATAAAAGAGGAAATCCAGAGGATCAAAGCAAATAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGAAACCAACAATCTCCAAGCTAAGGCGAAGAACGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 582 | 44.33 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCSNIFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHTHSGLAADHYRAELGSSSKCNNKMKMRAPIRNPTNDDQRIMNRAPEKKQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGLMLETNNLQAKAKNDGSEKHLMSVPGLHY | 193 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 11394486 | 11397539 | + | Carg10912-RA | Car05g01205 | 149591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car05g01205 | 193 | Pfam | YABBY protein | 8 | 165 | IPR006780 | GO:0007275 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car02g01086 | Car-Chr2:7536427 | Car05g01205 | Car-Chr5:11394486 | 1.70E-60 | dispersed | |
| Car02g01316 | Car-Chr2:8745490 | Car05g01205 | Car-Chr5:11394486 | 1.94E-54 | dispersed | |
| Car05g01205 | Car-Chr5:11394486 | Car15g01044 | Car-Chr15:8220769 | 9.22E-53 | dispersed | |
| Car10g00501 | Car-Chr10:2522223 | Car05g01205 | Car-Chr5:11394486 | 3.21E-80 | wgd | |
| Car11g00415 | Car-Chr11:2339258 | Car05g01205 | Car-Chr5:11394486 | 2.82E-72 | wgd | |
| Car12g01175 | Car-Chr12:11290190 | Car05g01205 | Car-Chr5:11394486 | 7.63E-122 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 3606 | PF04690 | YABBY | 1.20E-69 | CL0114 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car05g01205 | K25796 | - | csv:101219877 | 363.614 |