Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car05g01210 | ATGGCGCCATCGAAGAAGTTTAGAGGCGTTAGGCAACGACACTGGGGATCTTGGGTATCCGAAATTCGCCACCCTCTCCTGAAGAGAAGGGTTTGGTTGGGGACGTTTGAGACGGCGGAGGAGGCAGCGAGAGCCTACGATCAGGCCGCCGTGTTAATGAGCGGTCGAAACGCAAAAACCAACTTTCCGATGAGCGAAACGGCAGCGCCAGAATTAGAAAAGCTCAACAACATCACTACTCCATCTTCAACAAAGGGCTTATCAGAGATCCTCCACGCCAAGCTTCGAAAATGCAGCAAAGCGCCATCGCCATCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAAAAACGCGCCGGCCAACGCTCTGACTCAAGCTGGGTCATGACCGTTCATCTCGGAAAAGAAAACTCCTCCTCCTCCTCCATCGCCGCCGCTTCCGGCGGCAATGACGACGGTGGGCGGTTGTGGAATGGTAAAAAAAGTGGTGGCGCTTCAATGGCGGGCGGTGGACCCCACATGAGAAATTTGCAGATGGATGAAGAAGAAAGAATTGCATTGCAAATGATTGAGGAGTTGCTGAGCAGAAATTATGGTAACCCATCTGAAATTCAAGTTCAAGATCATCACGAGGAAGCAAAGCTAAGCCCTTTCTAA | 675 | 51.56 | MAPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSETAAPELEKLNNITTPSSTKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKENSSSSSIAAASGGNDDGGRLWNGKKSGGASMAGGGPHMRNLQMDEEERIALQMIEELLSRNYGNPSEIQVQDHHEEAKLSPF | 224 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 11426074 | 11427681 | + | Carg10907-RA | Car05g01210 | 149596 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car05g01210 | 224 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700|GO:0006355 | |
Car05g01210 | 224 | MobiDBLite | consensus disorder prediction | 144 | 178 | - | - | |
Car05g01210 | 224 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Car05g01210 | Car11g00423 | CCT | |
Car05g01210 | Car11g00423 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car05g01210 | Car-Chr5:11426074 | Car09g00404 | Car-Chr9:2243837 | 4.09E-74 | dispersed | |
Car17g00833 | Car-Chr17:7091802 | Car05g01210 | Car-Chr5:11426074 | 1.77E-14 | dispersed | |
Car11g00423 | Car-Chr11:2374062 | Car05g01210 | Car-Chr5:11426074 | 9.49E-80 | wgd | |
Car04g01272 | Car-Chr4:7380535 | Car05g01210 | Car-Chr5:11426074 | 1.09E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
3607 | PF00847 | AP2 | 3.10E-12 | CL0081 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car05g01210 | - | - | bhj:120080144 | 322.013 |