Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01237 ATGGCGGCGGCAATTTCTAATTCCTGCTCTGTTTTTCTTCTTCTTCTTCTTCTGACTCAGTGGGTCAACTCGGAGCCGACTCAGGACAAACAAGCGCTTCTCGATTTCCTCTCTAAAACCCCTCATGCCAATCGGGTTCAATGGAATCCTTCCAATTCCGTTTGTACTTGGATCGGCGTCGAGTGCGATTCCAACCAGTCGTTTGTTTACTCTCTTCGTTTGCCCGGCGTTGGCCTCGTCGGTCCGATTCCGGCTAATACCATCGGGAAATTGACTCAGCTCCGAGTTCTTAGCCTCCGTTCCAACCGTCTCTCCGGTGGGATCCCAACGGATTTTTCCAATTTGATAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCTCCGGCGAGTTTCCGCCGAGTTTGACTCAGCTAACTCGGCTGACTCGGCTCGATTTGTCGTCGAATAATATGTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACACATCTGAGTGGGCTTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAATATCTCCGCCGTGAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGCTCGATTCCGAAATCGTTAGCTAAATTCCCGGAATCCTCTTTCGCAGGAAACTTAGATCTCTGCGGCGGACCATTCCCATCCTGCAGCGGACCCTCTCCAACTCCATCGCAAAACCCCCCACCGACCGACGGAATCAGAAAATCCAAGAAGCTCTCCACGGCGGCGATAATCGGAATAATCATCGGCGCTGTTTTCGTTGCCTTTCTCCTCCTCCTCTTCCTCATCCTCTGTCTTCGACGGCGGTCCAATAGGCAGCCGGCGAAATCACAGAAACCACCATCGACAGTGGGAACAACGGCGAGAACAATCCCAATAGCGGAGGCGGGAACATCATCATCAAAAGACGACATTACCGGTGGGTCAATTGAGGCGACGGAGAGGAACAAGCTAGTGTTCTTCGAAGGAGGTATTTACAATTTCGATTTGGAGGATTTATTGAGAGCATCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTGCTGGAGGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAGGAATTCGAAACACAAATGGAGATTTTAGGGAAAATCAAACACGAAAATGTGGTTCCTCTCAGAGCTTTCTACTTCTCCAAAGACGAAAAACTGCTCGTTTATGATTACATCTCCACCGGCAGCTTCTCCGCCAGTCTCCACGGAAGCAGAGGCTCCGGCAGGACGCCGCTGGATTGGGATTCAAGAATGAGAATAGCAGTAAGCGTCGGCCGGGGACTAACCCATCTCCACGTCGTCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATTCTTCTCCGGCCGGACCACGACGCCTGCATTTCCGATTTCGGCCTGAACTCCCTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACAGAGCACCAGAGGTCGTCGAGACCCGAAAAGTCACATTCAAATCGGACGTTTACAGCTACGGCGTTCTCCTCCTCGAGCTTCTGACCGGAAAAGCCCCCAACCAGCAATCCCTTGGCGAAGACGGAATCGACCTTCCACGGTGGGTCCAATCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCAGAGCTAATGCGGTTCCACAATATCGAAGAAGAGATGGTTCAATTGCTTCAAATTGCAATGTCCTGTGTTTCGACTGTCCCCGATCAACGGCCGACAATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGCGAGACCGATGATGGGTTGCGTCAGTCTTCCGATGACCCATCGAAAGGATCGGACGTGAACACGCCGCCGGCGGAGTCTAGAACTCCGCCGCGAGTGACGCCGTAG 1965 52.57 MAAAISNSCSVFLLLLLLTQWVNSEPTQDKQALLDFLSKTPHANRVQWNPSNSVCTWIGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGGIPTDFSNLIMLRNLYLQDNAFSGEFPPSLTQLTRLTRLDLSSNNMSGPIPPSVDNLTHLSGLFLQNNGFSGSLPNISAVNLTNFNVSNNKLNGSIPKSLAKFPESSFAGNLDLCGGPFPSCSGPSPTPSQNPPPTDGIRKSKKLSTAAIIGIIIGAVFVAFLLLLFLILCLRRRSNRQPAKSQKPPSTVGTTARTIPIAEAGTSSSKDDITGGSIEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSFSASLHGSRGSGRTPLDWDSRMRIAVSVGRGLTHLHVVGKVVHGNIKSSNILLRPDHDACISDFGLNSLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEDGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPTMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11570461 11574642 - Carg10880-RA Car05g01237 149623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01237 654 MobiDBLite consensus disorder prediction 225 246 - -
Car05g01237 654 Pfam Protein kinase domain 350 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01237 654 MobiDBLite consensus disorder prediction 616 631 - -
Car05g01237 654 MobiDBLite consensus disorder prediction 285 319 - -
Car05g01237 654 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Car05g01237 654 ProSiteProfiles Protein kinase domain profile. 347 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g01237 654 MobiDBLite consensus disorder prediction 632 646 - -
Car05g01237 654 MobiDBLite consensus disorder prediction 287 319 - -
Car05g01237 654 MobiDBLite consensus disorder prediction 616 654 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car05g01237 Car11g00462 CCT
Car05g01237 Car10g00545 CCT
Car05g01237 Car12g01202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00922 Car-Chr4:5282794 Car05g01237 Car-Chr5:11570461 1.17E-127 dispersed
Car04g01016 Car-Chr4:5823672 Car05g01237 Car-Chr5:11570461 2.54E-17 dispersed
Car05g01237 Car-Chr5:11570461 Car07g01169 Car-Chr7:7070982 0 dispersed
Car15g00307 Car-Chr15:1664124 Car05g01237 Car-Chr5:11570461 2.05E-94 dispersed
Car10g00545 Car-Chr10:2736874 Car05g01237 Car-Chr5:11570461 0 wgd
Car11g00462 Car-Chr11:2548674 Car05g01237 Car-Chr5:11570461 0 wgd
Car12g01202 Car-Chr12:11466762 Car05g01237 Car-Chr5:11570461 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
88901 PF00069 Pkinase 3.00E-38 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01237 - - csv:101205802 1082.01